Evidence map›Paper›PMID 25889462›Full record

ArticleBMC veterinary research2015

TaqMan real-time polymerase chain reaction for detection of Ophidiomyces ophiodiicola, the fungus associated with snake fungal disease.

Elizabeth Bohuski, Jeffrey M Lorch, Kathryn M Griffin, David S Blehert

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 75 citations in OpenAlex.

  1. Journal of fungi (Basel, Switzerland) · 2026
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  2. Ophidiomycosis Prevalence and Disease Ecology in a Natrix tessellata (Laurenti, 1768) Population From Northern Italy.Journal of experimental zoology. Part A, Ecological and integrative physiology · 2026
    Article
  3. Preliminary Screening forMicroorganisms · 2026
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  4. Article
  5. Snake Fungal Disease (Ophidiomycosis) in Northern Pine Snakes (Journal of fungi (Basel, Switzerland) · 2025
    Article
  6. Nationwide Screening Unveils EndemicJournal of fungi (Basel, Switzerland) · 2025
    Article
  7. Article
  8. Retrospective Detection ofMicroorganisms · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Snake Fungal Disease in Free-Ranging Northern Pine Snakes (Journal of fungi (Basel, Switzerland) · 2024
    Article
  13. A Cross-Inoculation Experiment Reveals thatApplied and environmental microbiology · 2023
    Article
  14. Review
  15. Article
  16. Frontiers in microbiology · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Elizabeth BohuskiUnited States Geological Survey, National Wildlife Health Center, Madison, WI, USA. ebohuski@usgs.gov.
Jeffrey M LorchDepartment of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI, USA. jmlorch@wisc.edu.
Kathryn M GriffinUnited States Geological Survey, National Wildlife Health Center, Madison, WI, USA. kgriffin@usgs.gov.
David S BlehertUnited States Geological Survey, National Wildlife Health Center, Madison, WI, USA. dblehert@usgs.gov.
United States Geological Survey · USNational Wildlife Health Center · USUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFungal skin infections associated with Ophidiomyces ophiodiicola, a member of the Chrysosporium anamorph of Nannizziopsis vriesii (CANV) complex, have been linked to an increasing number of cases of snake fungal disease (SFD) in captive snakes around the world and in wild snake populations in eastern North America. The emergence of SFD in both captive and wild situations has led to an increased need for tools to better diagnose and study the disease.

resultsWe developed two TaqMan real-time polymerase chain reaction (PCR) assays to rapidly detect O. ophiodiicola in clinical samples. One assay targets the internal transcribed spacer region (ITS) of the fungal genome while the other targets the more variable intergenic spacer region (IGS). The PCR assays were qualified using skin samples collected from 50 snakes for which O. ophiodiicola had been previously detected by culture, 20 snakes with gross skin lesions suggestive of SFD but which were culture-negative for O. ophiodiicola, and 16 snakes with no clinical signs of infection. Both assays performed equivalently and proved to be more sensitive than traditional culture methods, detecting O. ophiodiicola in 98% of the culture-positive samples and in 40% of the culture-negative snakes that had clinical signs of SFD. In addition, the assays did not cross-react with a panel of 28 fungal species that are closely related to O. ophiodiicola or that commonly occur on the skin of snakes. The assays did, however, indicate that some asymptomatic snakes (~6%) may harbor low levels of the fungus, and that PCR should be paired with histology when a definitive diagnosis is required.

conclusionsThese assays represent the first published methods to detect O. ophiodiicola by real-time PCR. The ITS assay has great utility for assisting with SFD diagnoses whereas the IGS assay offers a valuable tool for research-based applications.

Indexed as

AnimalsBase SequenceChrysosporiumDNA, FungalReal-Time Polymerase Chain ReactionSensitivity and SpecificitySnakesDNA, Fungal

Identifiers

PMID25889462
PMCPMC4404600
OpenAlexW2097798428

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.