Evidence map›Paper›PMID 25888935›Full record

ArticleEuropean journal of medical research2015

Association of a variant in the regulatory region of NADPH oxidase 4 gene and metabolic syndrome in patients with chronic hepatitis C.

Erika Rabelo Forte de Siqueira, Luciano Beltrao Pereira, Jose Tadeu Stefano, Thiago Patente, Ana Mercedes Cavaleiro, Luydson Richardson Silva Vasconcelos, Rodrigo Feliciano Carmo, Leila Maria Moreira Beltrao Pereira, Flair Jose Carrilho, Maria Lucia Corrêa-Giannella and 1 more

Open access · goldAbstract read
In one paragraph

Article in European journal of medical research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Erika Rabelo Forte de SiqueiraDepartment of Gastroenterology (LIM-07), School of Medicine, University of São Paulo, Av. Dr Arnaldo, 455, 3° Andar, #3115, Cep.: 1246903, São Paulo, Brazil. erikarfs@gmail.com.
Luciano Beltrao PereiraDepartment of Gastroenterology (LIM-07), School of Medicine, University of São Paulo, Av. Dr Arnaldo, 455, 3° Andar, #3115, Cep.: 1246903, São Paulo, Brazil. lpereiras@hotmail.com.
Jose Tadeu StefanoDepartment of Gastroenterology (LIM-07), School of Medicine, University of São Paulo, Av. Dr Arnaldo, 455, 3° Andar, #3115, Cep.: 1246903, São Paulo, Brazil. jstefano@usp.br.
Thiago PatenteLaboratory for Cellular and Molecular Endocrinology - LIM-25, School of Medicine, University of São Paulo, Av. Dr Arnaldo, 455, 3° Andar, #3115, São Paulo, SP, Brazil. thiago.patente@usp.br.
Ana Mercedes CavaleiroLaboratory for Cellular and Molecular Endocrinology - LIM-25, School of Medicine, University of São Paulo, Av. Dr Arnaldo, 455, 3° Andar, #3115, São Paulo, SP, Brazil. cavana@lim25.fm.usp.br.
Luydson Richardson Silva VasconcelosLiver Institute of Pernambuco, Arnóbio Marques Street, 282, Recife, Pernambuco, Brazil. luydson@yahoo.com.br.
Rodrigo Feliciano CarmoCollege of Pharmaceutical Sciences, Federal University of São Francisco Valley, Avenida José de Sá Maniçoba - Centro, Petrolina, PE, Brazil. carmorodrigo@gmail.com.
Leila Maria Moreira Beltrao PereiraDepartment of Gastroenterology, School of Medicine, University of Pernambuco, Av. Professor Morais Rego, 1235, Pernambuco, Brazil. leilapereira@pq.cnpq.br.
Flair Jose CarrilhoDepartment of Gastroenterology (LIM-07), School of Medicine, University of São Paulo, Av. Dr Arnaldo, 455, 3° Andar, #3115, Cep.: 1246903, São Paulo, Brazil. fjcarril@usp.br.
Maria Lucia Corrêa-GiannellaLaboratory for Cellular and Molecular Endocrinology - LIM-25, School of Medicine, University of São Paulo, Av. Dr Arnaldo, 455, 3° Andar, #3115, São Paulo, SP, Brazil. malugia@lim25.fm.usp.br.
Claudia P OliveiraDepartment of Gastroenterology (LIM-07), School of Medicine, University of São Paulo, Av. Dr Arnaldo, 455, 3° Andar, #3115, Cep.: 1246903, São Paulo, Brazil. cpm@usp.br.
Universidade de São Paulo · BRUniversidade de Pernambuco · BRUniversidade Federal do Vale do São Francisco · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGiven the important contribution of the nicotinamide adenine dinucleotide phosphate (NADPH) oxidase system to the generation of reactive oxygen species induced by hepatitis C virus (HCV), we investigated two single nucleotide polymorphisms (SNPs) in the putative regulatory region of the genes encoding NADPH oxidase 4 catalytic subunit (NOX4) and its regulatory subunit p22phox (CYBA) and their relation with metabolic and histological variables in patients with HCV.

methodsOne hundred seventy eight naïve HCV patients (49.3% male; 65% HCV genotype 1) with positive HCV RNA were genotyped using specific primers and fluorescent-labeled probes for SNPs rs3017887 in NOX4 and -675 T → A in CYBA.

resultsNo association was found between the genotype frequencies of NOX4 and CYBA SNPs and inflammation scores or fibrosis stages in the overall population. The presence of the CA + AA genotypes of the NOX4 SNP was nominally associated with a lower alanine aminotransferase (ALT) concentration in the male population (CA + AA = 72.23 ± 6.34 U/L versus CC = 100.22 ± 9.85; mean ± SEM; P = 0.05). The TT genotype of the CYBA SNP was also nominally associated with a lower ALT concentration in the male population (TT = 84.01 ± 6.77 U/L versus TA + AA = 109.67 ± 18.37 U/L; mean ± SEM; P = 0.047). The minor A-allele of the NOX4 SNP was inversely associated with the frequency of metabolic syndrome (MS) in the male population (odds ratio (OR): 0.15; 95% confidence interval (CI): 0.03 to 0.79; P = 0.025).

conclusionsThe results suggest that the evaluated NOX4 and CYBA SNPs are not direct genetic determinants of fibrosis in HCV patients, but nevertheless NOX4 rs3017887 SNP could indirectly influence fibrosis susceptibility due to its inverse association with MS in male patients.

Indexed as

Hepatitis C, ChronicHumansMetabolic SyndromeNADPH Oxidase 4NADPH OxidasesPolymorphism, Single NucleotideCYBA protein, humanNADPH Oxidase 4NADPH OxidasesNOX4 protein, human

Identifiers

PMID25888935
PMCPMC4383049
OpenAlexW2134512232

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.