Evidence map›Paper›PMID 25888817›Full record

ArticleBMC systems biology2015

Robust network structure of the Sln1-Ypd1-Ssk1 three-component phospho-relay prevents unintended activation of the HOG MAPK pathway in Saccharomyces cerevisiae.

Joseph P Dexter, Ping Xu, Jeremy Gunawardena, Megan N McClean

Open access · diamondAbstract read
In one paragraph

Article in BMC systems biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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  11. New Genes Involved in Osmotic Stress Tolerance inFrontiers in microbiology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Joseph P DexterLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA. jdexter@fas.harvard.edu.
Ping XuLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA. pingxu@princeton.edu.
Jeremy GunawardenaDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA. jeremy@hms.harvard.edu.
Megan N McCleanLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA. mmcclean@wisc.edu.
Princeton University · USHarvard University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe yeast Saccharomyces cerevisiae relies on the high-osmolarity glycerol (HOG) signaling pathway to respond to increases in external osmolarity. The HOG pathway is rapidly activated under conditions of elevated osmolarity and regulates transcriptional and metabolic changes within the cell. Under normal growth conditions, however, a three-component phospho-relay consisting of the histidine kinase Sln1, the transfer protein Ypd1, and the response regulator Ssk1 represses HOG pathway activity by phosphorylation of Ssk1. This inhibition of the HOG pathway is essential for cellular fitness in normal osmolarity. Nevertheless, the extent to and mechanisms by which inhibition is robust to fluctuations in the concentrations of the phospho-relay components has received little attention.

resultsWe established that the Sln1-Ypd1-Ssk1 phospho-relay is robust-it is able to maintain inhibition of the HOG pathway even after significant changes in the levels of its three components. We then developed a biochemically realistic mathematical model of the phospho-relay, which suggested that robustness is due to buffering by a large excess pool of Ypd1. We confirmed experimentally that depletion of the Ypd1 pool results in inappropriate activation of the HOG pathway.

conclusionsWe identified buffering by an intermediate component in excess as a novel mechanism through which a phospho-relay can achieve robustness. This buffering requires multiple components and is therefore unavailable to two-component systems, suggesting one important advantage of multi-component relays.

Indexed as

MAP Kinase Signaling SystemGlycerolIntracellular Signaling Peptides and ProteinsModels, BiologicalModels, MolecularOsmolar ConcentrationPhosphorylationProtein KinasesProtein Structure, TertiarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsGlycerolIntracellular Signaling Peptides and ProteinsProtein KinasesSaccharomyces cerevisiae ProteinsSLN1 protein, S cerevisiaeSSK1 protein, S cerevisiaeYPD1 protein, S cerevisiae

Identifiers

PMID25888817
PMCPMC4377207
OpenAlexW2113342589

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.