Evidence map›Paper›PMID 25888618›Full record

ArticlePlant physiology2015

The SLOW GROWTH3 Pentatricopeptide Repeat Protein Is Required for the Splicing of Mitochondrial NADH Dehydrogenase Subunit7 Intron 2 in Arabidopsis.

Wei-Yu Hsieh, Jo-Chien Liao, Chiung-Yun Chang, Thomas Harrison, Christina Boucher, Ming-Hsiun Hsieh

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 89 citations in OpenAlex.

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  13. Identification and molecular mapping of a major quantitative trait locus underlying branch angle in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
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  14. Article
  15. Functions of PPR Proteins in Plant Growth and Development.International journal of molecular sciences · 2021
    Review
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  18. EMP32 is required for theRNA biology · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Wei-Yu HsiehInstitute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan (W.-Y.H., J.-C.L., C.-Y.C., M.-H.H.); andDepartment of Computer Science, Colorado State University, Fort Collins, Colorado 80523-1873 (T.H., C.B.).ORCID http://orcid.org/0000-0001-6769-8165
Jo-Chien LiaoInstitute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan (W.-Y.H., J.-C.L., C.-Y.C., M.-H.H.); andDepartment of Computer Science, Colorado State University, Fort Collins, Colorado 80523-1873 (T.H., C.B.).
Chiung-Yun ChangInstitute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan (W.-Y.H., J.-C.L., C.-Y.C., M.-H.H.); andDepartment of Computer Science, Colorado State University, Fort Collins, Colorado 80523-1873 (T.H., C.B.).
Thomas HarrisonInstitute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan (W.-Y.H., J.-C.L., C.-Y.C., M.-H.H.); andDepartment of Computer Science, Colorado State University, Fort Collins, Colorado 80523-1873 (T.H., C.B.).
Christina BoucherInstitute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan (W.-Y.H., J.-C.L., C.-Y.C., M.-H.H.); andDepartment of Computer Science, Colorado State University, Fort Collins, Colorado 80523-1873 (T.H., C.B.).ORCID http://orcid.org/0000-0001-5617-7495
Ming-Hsiun HsiehInstitute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan (W.-Y.H., J.-C.L., C.-Y.C., M.-H.H.); andDepartment of Computer Science, Colorado State University, Fort Collins, Colorado 80523-1873 (T.H., C.B.) ming@gate.sinica.edu.tw.ORCID http://orcid.org/0000-0003-2703-9979
Institute of Plant and Microbial Biology, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mitochondria play an important role in maintaining metabolic and energy homeostasis in the cell. In plants, impairment in mitochondrial functions usually has detrimental effects on growth and development. To study genes that are important for plant growth, we have isolated a collection of slow growth (slo) mutants in Arabidopsis (Arabidopsis thaliana). One of the slo mutants, slo3, has a significant reduction in mitochondrial complex I activity. The slo3 mutant has a four-nucleotide deletion in At3g61360 that encodes a pentatricopeptide repeat (PPR) protein. The SLO3 protein contains nine classic PPR domains belonging to the P subfamily. The small deletion in the slo3 mutant changes the reading frame and creates a premature stop codon in the first PPR domain. We demonstrated that the SLO3-GFP is localized to the mitochondrion. Further analysis of mitochondrial RNA metabolism revealed that the slo3 mutant was defective in splicing of NADH dehydrogenase subunit7 (nad7) intron 2. This specific splicing defect led to a dramatic reduction in complex I activity in the mutant as revealed by blue native gel analysis. Complementation of slo3 by 35S:SLO3 or 35S:SLO3-GFP restored the splicing of nad7 intron 2, the complex I activity, and the growth defects of the mutant. Together, these results indicate that the SLO3 PPR protein is a splicing factor of nad7 intron 2 in Arabidopsis mitochondria.

Indexed as

Repetitive Sequences, Amino AcidAmino Acid SequenceArabidopsisArabidopsis ProteinsBase SequenceCell ProliferationDNA, ComplementaryElectron Transport Complex IGenes, PlantGenetic Complementation TestGreen Fluorescent ProteinsIntronsMitochondriaMitochondrial ProteinsMolecular Sequence DataMutationArabidopsis ProteinsDNA, ComplementaryElectron Transport Complex IGreen Fluorescent ProteinsMitochondrial ProteinsNAD7 protein, ArabidopsisNADH DehydrogenaseRNA, MessengerRNA Splicing FactorsSLO3 protein, Arabidopsis

Identifiers

PMID25888618
PMCPMC4453791
OpenAlexW2163801773

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.