Evidence map›Paper›PMID 25888547›Full record

ArticleBMC gastroenterology2015

The NFKB1 polymorphism (rs4648068) is associated with the cell proliferation and motility in gastric cancer.

Ying Chen, Renquan Lu, Hui Zheng, Ran Xiao, Jingjing Feng, Hongling Wang, Xiang Gao, Lin Guo

Open access · goldAbstract read
In one paragraph

Article in BMC gastroenterology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 38 citations in OpenAlex.

  1. Pooled it
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  12. Potentially functional variants ofFrontiers in oncology · 2022
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  16. Long intergenic noncoding RNA LINC00284 knockdown reduces angiogenesis in ovarian cancer cellsFASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2019
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Ying ChenDepartment of Clinical Laboratory, Shanghai Cancer Center, Fudan University, Shanghai, 200032, China. cygl_fudan@126.com.
Renquan LuDepartment of Clinical Laboratory, Shanghai Cancer Center, Fudan University, Shanghai, 200032, China. lurenquan66@hotmail.com.
Hui ZhengDepartment of Clinical Laboratory, Shanghai Cancer Center, Fudan University, Shanghai, 200032, China. zh19841207xx@163.com.
Ran XiaoDepartment of Clinical Laboratory, Shanghai Cancer Center, Fudan University, Shanghai, 200032, China. ljerry19890505@hotmail.com.
Jingjing FengDepartment of Clinical Laboratory, Shanghai Cancer Center, Fudan University, Shanghai, 200032, China. fjj83996@163.com.
Hongling WangDepartment of Oncology, Shanghai Medical College, Fudan University, Shanghai, 200032, China. HonglingWang123@163.com.
Xiang GaoDepartment of Clinical Laboratory, Shanghai Cancer Center, Fudan University, Shanghai, 200032, China. gxcy2001@hotmail.com.
Lin GuoDepartment of Clinical Laboratory, Shanghai Cancer Center, Fudan University, Shanghai, 200032, China. 1251487447@qq.com.
Fudan University Shanghai Cancer Center · CNShanghai Medical College of Fudan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWe have demonstrated previously that NFKB1 single nucleotide polymorphism (SNP) rs4648068 GG homozygote was associated with the increased risk of gastric cancer in Chinese Han population. In this study, we constructed the recombinant plasmid pGL3-AA, pGL3-GG, pGL3-AA-NFKB and pGL3-GG-NFKB to investigate the function of rs4648068 by cell biology experiments.

methodsQuantitative real-time PCR was used to detect NFKB1 SNP rs4648068 genotype in the patients with gastric cancer. Anti-NF-κB1 p50 polyclonal antibodies were used for immunohistochemical analysis of the tissue specimens. The subsection of NFKB1 containing the promoter site and adjacent three consecutive exons were obtained by PCR technique and subcloned into the vector pGL3-Basic. Dual-Luciferase reporter assay was used to detect the transcriptional activity of the constructed promoter. Effects of transcription factor NFKB1 on C/EBPβ expression were determined by chromatin immunoprecipitation and Western analysis. Furthermore, proliferation and invasion ability of the transduced cell were also measured and compared.

resultsIntensive staining for p50 expression was observed in the tissues of GG genotype patients, compared with those of GA group and AA genotype patients. The transcriptional activity of rs4648068 (A > G) by dual-Luciferase reporter assay suggested that the luciferase activity of homozygote group (pGL3-GG) was greater than that of the control (pGL3-AA), especially at the stimulation of LPS. We found that the luciferase activity was also influenced by pGL3-GG levels. The effects of NFKB1 rs4648068 were enhanced by rs4648065 on the transduced cells. The interaction between NFKB1 promoter nucleotide sequence and C/EBPβ was regulated by the functional SNP rs4648068 in SGC-7901 cells. Our data indicated that the transduction of pGL3 expression plasmid pGL3-GG-NFKB improved the proliferation and motility of gastric cancer cells. Correspondingly, the homozygote GG of SNP rs4648068 strengthened the transcriptional activity of NFKB1 and influenced the cell biological activity.

conclusionThe transcriptional activity of NFKB1 was associated with SNP rs4648068, and this functional SNP site has the important effects on cell proliferation and motility.

Indexed as

AdenocarcinomaCCAAT-Enhancer-Binding ProteinsCell Line, TumorCell MovementCell ProliferationDNA, RecombinantGene ExpressionGenes, ReporterGenetic VectorsGenotypeHumansLipopolysaccharidesLuciferasesNF-kappa B p50 SubunitPlasmidsPolymorphism, Single NucleotideCCAAT-Enhancer-Binding ProteinsDNA, RecombinantLipopolysaccharidesLuciferasesNF-kappa B p50 SubunitNFKB1 protein, human

Identifiers

PMID25888547
PMCPMC4331381
OpenAlexW2160599987

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.