Evidence map›Paper›PMID 25888318›Full record

ArticleBMC biochemistry2015

The exchanged EF-hands in calmodulin and troponin C chimeras impair the Ca²⁺-induced hydrophobicity and alter the interaction with Orai1: a spectroscopic, thermodynamic and kinetic study.

Drake Jensen, Nicole Reynolds, Ya-Ping Yang, Shubha Shakya, Zhi-Qiang Wang, Dennis J Stuehr, Chin-Chuan Wei

Open access · hybridAbstract read
In one paragraph

Article in BMC biochemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
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  3. A cryptophane-based "turn-on"Organic & biomolecular chemistry · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Drake JensenDepartment of Chemistry, Southern Illinois University Edwardsville, Edwardsville, IL, 62026, USA. djensen@siue.edu.
Nicole ReynoldsDepartment of Chemistry, Southern Illinois University Edwardsville, Edwardsville, IL, 62026, USA. nreynol82@gmail.com.
Ya-Ping YangDepartment of Pathobiology, The Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, 44195, USA. yyny@yahoo.com.
Shubha ShakyaDepartment of Chemistry, Southern Illinois University Edwardsville, Edwardsville, IL, 62026, USA. sshakya@siue.edu.
Zhi-Qiang WangDepartment of Chemistry, Kent State University at Tuscarawas, New Philadelphia, OH, 44663, USA. zwang3@kent.edu.
Dennis J StuehrDepartment of Pathobiology, The Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, 44195, USA. stuehrd@ccf.org.
Chin-Chuan WeiDepartment of Chemistry, Southern Illinois University Edwardsville, Edwardsville, IL, 62026, USA. cwei@siue.edu.
Southern Illinois University Edwardsville · USCleveland Foundation · USKent State University · US

Funding

Structural Determinants Of Ceruloplasmin Inflammatory ActivityP01HL076491 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI PLOW, EDWARD FRANKLIN · 2004 to 2019
$27.3M
NHLBI NIH HHS P01 HL076491
6 · The paper itself

Abstract

backgroundCalmodulin (CaM) plays an important role in Ca(2+)-dependent signal transduction. Ca(2+) binding to CaM triggers a conformational change, forming a hydrophobic patch that is important for target protein recognition. CaM regulates a Ca(2+)-dependent inactivation process in store-operated Ca(2+) entry, by interacting Orai1. To understand the relationship between Ca(2+)-induced hydrophobicity and CaM/Orai interaction, chimera proteins constructed by exchanging EF-hands of CaM with those of Troponin C (TnC) are used as an informative probe to better understand the functionality of each EF-hand.

resultsANS was used to assess the context of the induced hydrophobic surface on CaM and chimeras upon Ca(2+) binding. The exchanged EF-hands from TnC to CaM resulted in reduced hydrophobicity compared with wild-type CaM. ANS lifetime measurements indicated that there are two types of ANS molecules with rather distinct fluorescence lifetimes, each specifically corresponding to one lobe of CaM or chimeras. Thermodynamic studies indicated the interaction between CaM and a 24-residue peptide corresponding to the CaM-binding domain of Orail1 (Orai-CMBD) is a 1:2 CaM/Orai-CMBD binding, in which each peptide binding yields a similar enthalpy change (ΔH = -5.02 ± 0.13 kcal/mol) and binding affinity (K(a) = 8.92 ± 1.03 × 10(5) M(-1)). With the exchanged EF1 and EF2, the resulting chimeras noted as CaM(1TnC) and CaM(2TnC), displayed a two sequential binding mode with a one-order weaker binding affinity and lower ΔH than that of CaM, while CaM(3TnC) and CaM(4TnC) had similar binding thermodynamics as CaM. The dissociation rate constant for CaM/Orai-CMBD was determined to be 1.41 ± 0.08 s(-1) by rapid kinetics. Stern-Volmer plots of Orai-CMBD Trp76 indicated that the residue is located in a very hydrophobic environment but becomes more solvent accessible when EF1 and EF2 were exchanged.

conclusionsUsing ANS dye to assess induced hydrophobicity showed that exchanging EFs for all Ca(2+)-bound chimeras impaired ANS fluorescence and/or binding affinity, consistent with general concepts about the inadequacy of hydrophobic exposure for chimeras. However, such ANS responses exhibited no correlation with the ability to interact with Orai-CMBD. Here, the model of 1:2 binding stoichiometry of CaM/Orai-CMBD established in solution supports the already published crystal structure.

Indexed as

EF Hand MotifsHydrophobic and Hydrophilic InteractionsAmino Acid SequenceCalciumCalcium ChannelsCalmodulinHumansKineticsModels, MolecularMolecular Sequence DataProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryRecombinant Fusion ProteinsSolventsThermodynamicsCalciumCalcium ChannelsCalmodulinRecombinant Fusion ProteinsSolventsTroponin C

Identifiers

PMID25888318
PMCPMC4349623
OpenAlexW1972184611

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.