Evidence map›Paper›PMID 25888177›Full record

ArticleApplied and environmental microbiology2015

Gene Deletions Resulting in Increased Nitrogen Release by Azotobacter vinelandii: Application of a Novel Nitrogen Biosensor.

Brett M Barney, Lauren J Eberhart, Janet M Ohlert, Carolann M Knutson, Mary H Plunkett

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
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  17. A synthetic co-culture for bioproduction of ammonia from methane and air.Journal of industrial microbiology & biotechnology · 2024
    Article
  18. Article
  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Brett M BarneyDepartment of Bioproducts and Biosystems Engineering, University of Minnesota, St. Paul, Minnesota, USA Biotechnology Institute, University of Minnesota, St. Paul, Minnesota, USA bbarney@umn.edu.
Lauren J EberhartDepartment of Bioproducts and Biosystems Engineering, University of Minnesota, St. Paul, Minnesota, USA Biotechnology Institute, University of Minnesota, St. Paul, Minnesota, USA.
Janet M OhlertDepartment of Bioproducts and Biosystems Engineering, University of Minnesota, St. Paul, Minnesota, USA.
Carolann M KnutsonDepartment of Bioproducts and Biosystems Engineering, University of Minnesota, St. Paul, Minnesota, USA.
Mary H PlunkettDepartment of Bioproducts and Biosystems Engineering, University of Minnesota, St. Paul, Minnesota, USA.
University of Minnesota · USBiotechnology Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Azotobacter vinelandii is a widely studied model diazotrophic (nitrogen-fixing) bacterium and also an obligate aerobe, differentiating it from many other diazotrophs that require environments low in oxygen for the function of the nitrogenase. As a free-living bacterium, A. vinelandii has evolved enzymes and transporters to minimize the loss of fixed nitrogen to the surrounding environment. In this study, we pursued efforts to target specific enzymes and further developed screens to identify individual colonies of A. vinelandii producing elevated levels of extracellular nitrogen. Targeted deletions were done to convert urea into a terminal product by disrupting the urease genes that influence the ability of A. vinelandii to recycle the urea nitrogen within the cell. Construction of a nitrogen biosensor strain was done to rapidly screen several thousand colonies disrupted by transposon insertional mutagenesis to identify strains with increased extracellular nitrogen production. Several disruptions were identified in the ammonium transporter gene amtB that resulted in the production of sufficient levels of extracellular nitrogen to support the growth of the biosensor strain. Further studies substituting the biosensor strain with the green alga Chlorella sorokiniana confirmed that levels of nitrogen produced were sufficient to support the growth of this organism when the medium was supplemented with sufficient sucrose to support the growth of the A. vinelandii in coculture. The nature and quantities of nitrogen released by urease and amtB disruptions were further compared to strains reported in previous efforts that altered the nifLA regulatory system to produce elevated levels of ammonium. These results reveal alternative approaches that can be used in various combinations to yield new strains that might have further application in biofertilizer schemes.

Indexed as

Gene DeletionAzotobacter vinelandiiDNA Transposable ElementsGene Knockout TechniquesGenetic TestingMutagenesis, InsertionalNitrogenUreaDNA Transposable ElementsNitrogenUrea

Identifiers

PMID25888177
PMCPMC4475869
OpenAlexW2058684760

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.