Evidence map›Paper›PMID 25887950›Full record

ArticleBMC genomics2015

Identification of three extra-chromosomal replicons in Leptospira pathogenic strain and development of new shuttle vectors.

Weinan Zhu, Jin Wang, Yongzhang Zhu, Biao Tang, Yunyi Zhang, Ping He, Yan Zhang, Boyu Liu, Xiaokui Guo, Guoping Zhao and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.1field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Leptospira and Leptospirosis.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  3. Article
  4. ExploringMicroorganisms · 2024
    Article
  5. Review
  6. Chronic Release of Tailless Phage Particles from Lactococcus lactis.Applied and environmental microbiology · 2022
    Article
  7. Article
  8. Creating a Library of Random Transposon Mutants in Leptospira.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
  9. Applied and environmental microbiology · 2018
    Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Weinan ZhuDepartment of Microbiology and Immunology, Institutes of Medical Science, Shanghai Jiao Tong University School of Medicine, 280 South Chongqing Road, Shanghai, 200025, China. zhuweinan@sjtu.edu.cn.
Jin WangCAS Key Laboratory of Synthetic Biology, Institute of Plant Physiology and Ecology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, Shanghai, China. jinwang@sibs.ac.cn.
Yongzhang ZhuDepartment of Microbiology and Immunology, Institutes of Medical Science, Shanghai Jiao Tong University School of Medicine, 280 South Chongqing Road, Shanghai, 200025, China. yzhzhu@hotmail.com.
Biao TangState Key Laboratory of Genetic Engineering, Department of Microbiology, School of Life Sciences, Fudan University, 220 Handan Road, Shanghai, 200433, China. tb_411@163.com.
Yunyi ZhangCAS Key Laboratory of Synthetic Biology, Institute of Plant Physiology and Ecology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, Shanghai, China. zhangyunyi2003@163.com.
Ping HeDepartment of Microbiology and Immunology, Institutes of Medical Science, Shanghai Jiao Tong University School of Medicine, 280 South Chongqing Road, Shanghai, 200025, China. hpatsh@sjtu.edu.cn.
Yan ZhangDepartment of Microbiology and Immunology, Institutes of Medical Science, Shanghai Jiao Tong University School of Medicine, 280 South Chongqing Road, Shanghai, 200025, China. zhangyan007236@126.com.
Boyu LiuDepartment of Microbiology and Immunology, Institutes of Medical Science, Shanghai Jiao Tong University School of Medicine, 280 South Chongqing Road, Shanghai, 200025, China. centian2004@163.com.
Xiaokui GuoDepartment of Microbiology and Immunology, Institutes of Medical Science, Shanghai Jiao Tong University School of Medicine, 280 South Chongqing Road, Shanghai, 200025, China. xkguo@shsmu.edu.cn.
Guoping ZhaoCAS Key Laboratory of Synthetic Biology, Institute of Plant Physiology and Ecology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, Shanghai, China. gpzhao@sibs.ac.cn.
Jinhong QinDepartment of Microbiology and Immunology, Institutes of Medical Science, Shanghai Jiao Tong University School of Medicine, 280 South Chongqing Road, Shanghai, 200025, China. jinhongqin@sjtu.edu.cn.
Shanghai Jiao Tong University · CNFudan University · CNShanghai Institutes for Biological Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe genome of pathogenic Leptospira interrogans contains two chromosomes. Plasmids and prophages are known to play specific roles in gene transfer in bacteria and can potentially serve as efficient genetic tools in these organisms. Although plasmids and prophage remnants have recently been reported in Leptospira species, their characteristics and potential applications in leptospiral genetic transformation systems have not been fully evaluated.

resultsThree extrachromosomal replicons designated lcp1 (65,732 bp), lcp2 (56,757 bp), and lcp3 (54,986 bp) in the L. interrogans serovar Linhai strain 56609 were identified through whole genome sequencing. All three replicons were stable outside of the bacterial chromosomes. Phage particles were observed in the culture supernatant of 56609 after mitomycin C induction, and lcp3, which contained phage-related genes, was considered to be an inducible prophage. L. interrogans-Escherichia coli shuttle vectors, constructed with the predicted replication elements of single rep or rep combined with parAB loci from the three plasmids were shown to successfully transform into both saprophytic and pathogenic Leptospira species, suggesting an essential function for rep genes in supporting auto-replication of the plasmids. Additionally, a wide distribution of homologs of the three rep genes was identified in L. interrogans isolates, and correlation tests showed that the transformability of the shuttle vectors in L. interrogans isolates depended, to certain extent, on genetic compatibility between the rep sequences of both plasmid and host.

conclusionsThree extrachromosomal replicons co-exist in L. interrogans, one of which we consider to be an inducible prophage. The vectors constructed with the rep genes of the three replicons successfully transformed into saprophytic and pathogenic Leptospira species alike, but this was partly dependent on genetic compatibility between the rep sequences of both plasmid and host.

Indexed as

BacteriophagesBase SequenceChromosomes, BacterialDNA ReplicationEscherichia coliGenetic VectorsHigh-Throughput Nucleotide SequencingLeptospira interrogansPlasmidsRepliconSequence Analysis, DNA

Identifiers

PMID25887950
PMCPMC4338851
OpenAlexW2085688799

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.