Evidence map›Paper›PMID 25887812›Full record

ArticleBMC genomics2015

Genome reduction and potential metabolic complementation of the dual endosymbionts in the whitefly Bemisia tabaci.

Qiong Rao, Pierre-Antoine Rollat-Farnier, Dan-Tong Zhu, Diego Santos-Garcia, Francisco J Silva, Andrés Moya, Amparo Latorre, Cecilia C Klein, Fabrice Vavre, Marie-France Sagot and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
21.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 123 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Qiong RaoMinistry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, 310058, Hangzhou, China. qiong.rao@163.com.
Pierre-Antoine Rollat-FarnierUniversité de Lyon, Université Lyon1, Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 558, 69622, Villeurbanne, Cedex, France. pierre-antoine.farnier@univ-lyon1.fr.
Dan-Tong ZhuMinistry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, 310058, Hangzhou, China. zjwzzdt@163.com.
Diego Santos-GarciaInstitut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Valencia, Spain. Diego.Santos@uv.es.
Francisco J SilvaInstitut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Valencia, Spain. francisco.silva@uv.es.
Andrés MoyaInstitut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Valencia, Spain. Andres.Moya@uv.es.
Amparo LatorreInstitut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de València, Valencia, Spain. amparo.latorre@uv.es.
Cecilia C KleinUniversité de Lyon, Université Lyon1, Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 558, 69622, Villeurbanne, Cedex, France. Cecilia.Coimbra-Klein@univ-lyon1.fr.
Fabrice VavreUniversité de Lyon, Université Lyon1, Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 558, 69622, Villeurbanne, Cedex, France. Fabrice.Vavre@univ-lyon1.fr.
Marie-France SagotUniversité de Lyon, Université Lyon1, Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 558, 69622, Villeurbanne, Cedex, France. marie-france.sagot@inria.fr.
Shu-Sheng LiuMinistry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, 310058, Hangzhou, China. shshliu@zju.edu.cn.
Laurence MoutonUniversité de Lyon, Université Lyon1, Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 558, 69622, Villeurbanne, Cedex, France. laurence.mouton@univ-lyon1.fr.
Xiao-Wei WangMinistry of Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Sciences, Zhejiang University, 310058, Hangzhou, China. xwwang@zju.edu.cn.
Universitat de València · ESUniversité Claude Bernard Lyon 1 · FRZhejiang University · CNCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe whitefly Bemisia tabaci is an important agricultural pest with global distribution. This phloem-sap feeder harbors a primary symbiont, "Candidatus Portiera aleyrodidarum", which compensates for the deficient nutritional composition of its food sources, and a variety of secondary symbionts. Interestingly, all of these secondary symbionts are found in co-localization with the primary symbiont within the same bacteriocytes, which should favor the evolution of strong interactions between symbionts.

resultsIn this paper, we analyzed the genome sequences of the primary symbiont Portiera and of the secondary symbiont Hamiltonella in the B. tabaci Mediterranean (MED) species in order to gain insight into the metabolic role of each symbiont in the biology of their host. The genome sequences of the uncultured symbionts Portiera and Hamiltonella were obtained from one single bacteriocyte of MED B. tabaci. As already reported, the genome of Portiera is highly reduced (357 kb), but has kept a number of genes encoding most essential amino-acids and carotenoids. On the other hand, Portiera lacks almost all the genes involved in the synthesis of vitamins and cofactors. Moreover, some pathways are incomplete, notably those involved in the synthesis of some essential amino-acids. Interestingly, the genome of Hamiltonella revealed that this secondary symbiont can not only provide vitamins and cofactors, but also complete the missing steps of some of the pathways of Portiera. In addition, some critical amino-acid biosynthetic genes are missing in the two symbiotic genomes, but analysis of whitefly transcriptome suggests that the missing steps may be performed by the whitefly itself or its microbiota.

conclusionsThese data suggest that Portiera and Hamiltonella are not only complementary but could also be mutually dependent to provide a full complement of nutrients to their host. Altogether, these results illustrate how functional redundancies can lead to gene losses in the genomes of the different symbiotic partners, reinforcing their inter-dependency.

Indexed as

Genome, BacterialAmino AcidsAnimalsDNAEnterobacteriaceaeHalomonadaceaeHemipteraHigh-Throughput Nucleotide SequencingIn Situ Hybridization, FluorescenceMetabolic Networks and PathwaysMolecular Sequence DataSequence Analysis, DNASymbiosisVitaminsAmino AcidsDNAVitamins

Identifiers

PMID25887812
PMCPMC4438442
OpenAlexW2073037954

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.