Evidence map›Paper›PMID 25887780›Full record

ArticleBMC genomics2015

Global gene expression profiling of brown to white adipose tissue transformation in sheep reveals novel transcriptional components linked to adipose remodeling.

Astrid L Basse, Karen Dixen, Rachita Yadav, Malin P Tygesen, Klaus Qvortrup, Karsten Kristiansen, Bjørn Quistorff, Ramneek Gupta, Jun Wang, Jacob B Hansen

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 2 pooled it
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 2 syntheses or guidelines pooled it, 94 citations in OpenAlex.

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  10. Genomic Insights into the Origin, High Fecundity and Environmental Adaptation of Hu Sheep.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 4 countries.

Astrid L BasseDepartment of Biomedical Sciences, University of Copenhagen, DK-2200, Copenhagen, Denmark. astrid.basse@bio.ku.dk.
Karen DixenDepartment of Biomedical Sciences, University of Copenhagen, DK-2200, Copenhagen, Denmark. dixen.karen@gmail.com.
Rachita YadavDepartment of Biology, University of Copenhagen, DK-2100, Copenhagen, Denmark. rachita@cbs.dtu.dk.
Malin P TygesenDepartment of Veterinary Clinical and Animal Sciences, University of Copenhagen, DK-1870, Frederiksberg, Denmark. mpt@stevnslam.dk.
Klaus QvortrupDepartment of Biomedical Sciences, University of Copenhagen, DK-2200, Copenhagen, Denmark. qvortrup@sund.ku.dk.
Karsten KristiansenDepartment of Systems Biology, Center for Biological Sequence Analysis, Technical University of Denmark, DK-2800, Kongens Lyngby, Denmark. karsten.kristiansen@bio.ku.dk.
Bjørn QuistorffDepartment of Biomedical Sciences, University of Copenhagen, DK-2200, Copenhagen, Denmark. bqui@sund.ku.dk.
Ramneek GuptaDepartment of Biology, University of Copenhagen, DK-2100, Copenhagen, Denmark. ramneek@cbs.dtu.dk.
Jun WangDepartment of Systems Biology, Center for Biological Sequence Analysis, Technical University of Denmark, DK-2800, Kongens Lyngby, Denmark. wangj@genomics.org.cn.
Jacob B HansenDepartment of Systems Biology, Center for Biological Sequence Analysis, Technical University of Denmark, DK-2800, Kongens Lyngby, Denmark. jacob.hansen@bio.ku.dk.
University of Copenhagen · DKTechnical University of Denmark · DKBGI Group (China) · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLarge mammals are capable of thermoregulation shortly after birth due to the presence of brown adipose tissue (BAT). The majority of BAT disappears after birth and is replaced by white adipose tissue (WAT).

resultsWe analyzed the postnatal transformation of adipose in sheep with a time course study of the perirenal adipose depot. We observed changes in tissue morphology, gene expression and metabolism within the first two weeks of postnatal life consistent with the expected transition from BAT to WAT. The transformation was characterized by massively decreased mitochondrial abundance and down-regulation of gene expression related to mitochondrial function and oxidative phosphorylation. Global gene expression profiling demonstrated that the time points grouped into three phases: a brown adipose phase, a transition phase and a white adipose phase. Between the brown adipose and the transition phase 170 genes were differentially expressed, and 717 genes were differentially expressed between the transition and the white adipose phase. Thirty-eight genes were shared among the two sets of differentially expressed genes. We identified a number of regulated transcription factors, including NR1H3, MYC, KLF4, ESR1, RELA and BCL6, which were linked to the overall changes in gene expression during the adipose tissue remodeling. Finally, the perirenal adipose tissue expressed both brown and brite/beige adipocyte marker genes at birth, the expression of which changed substantially over time.

conclusionsUsing global gene expression profiling of the postnatal BAT to WAT transformation in sheep, we provide novel insight into adipose tissue plasticity in a large mammal, including identification of novel transcriptional components linked to adipose tissue remodeling. Moreover, our data set provides a useful resource for further studies in adipose tissue plasticity.

Indexed as

Gene Expression ProfilingGene Expression Regulation, DevelopmentalAdipose Tissue, BrownAdipose Tissue, WhiteAnimalsCitrate (si)-SynthaseCluster AnalysisDNA, MitochondrialDown-RegulationIon ChannelsMitochondriaMitochondrial ProteinsPrincipal Component AnalysisSheepTranscription FactorsUncoupling Protein 1Citrate (si)-SynthaseDNA, MitochondrialIon ChannelsMitochondrial ProteinsTranscription FactorsUncoupling Protein 1

Identifiers

PMID25887780
PMCPMC4407871
OpenAlexW2037230802

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.