Evidence map›Paper›PMID 25887755›Full record

ArticleBMC microbiology2015

Structure and function of a short LOV protein from the marine phototrophic bacterium Dinoroseobacter shibae.

Stephan Endres, Joachim Granzin, Franco Circolone, Andreas Stadler, Ulrich Krauss, Thomas Drepper, Vera Svensson, Esther Knieps-Grünhagen, Astrid Wirtz, Anneliese Cousin and 4 more

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 48 citations in OpenAlex.

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  8. Residue alterations within a conserved hydrophobic pocket influence light, oxygen, voltage photoreceptor dark recovery.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2023
    Article
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  12. Chemiosmotic Energy Conservation inFrontiers in microbiology · 2018
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  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Stephan EndresInstitute of Molecular Enzyme Technology, Heinrich-Heine-Universität Düsseldorf, Forschungszentrum Jülich, D-52425, Jülich, Germany. s.endres@fz-juelich.de.
Joachim GranzinInstitute of Complex Systems, ICS-6: Structural Biochemistry, Forschungszentrum Jülich, D-52425, Jülich, Germany. j.granzin@fz-juelich.de.
Franco CircoloneInstitute of Molecular Enzyme Technology, Heinrich-Heine-Universität Düsseldorf, Forschungszentrum Jülich, D-52425, Jülich, Germany. f.circolone@fz-juelich.de.
Andreas StadlerJuelich Centre for Neutron Science JCNS (JCNS-1) & Institute for Complex Systems (ICS-1), Forschungszentrum Jülich, D-52425, Jülich, Germany. a.stadler@fz-juelich.de.
Ulrich KraussInstitute of Molecular Enzyme Technology, Heinrich-Heine-Universität Düsseldorf, Forschungszentrum Jülich, D-52425, Jülich, Germany. u.krauss@fz-juelich.de.
Thomas DrepperInstitute of Molecular Enzyme Technology, Heinrich-Heine-Universität Düsseldorf, Forschungszentrum Jülich, D-52425, Jülich, Germany. t.drepper@fz-juelich.de.
Vera SvenssonInstitute of Molecular Enzyme Technology, Heinrich-Heine-Universität Düsseldorf, Forschungszentrum Jülich, D-52425, Jülich, Germany. v.svensson@fz-juelich.de.
Esther Knieps-GrünhagenInstitute of Molecular Enzyme Technology, Heinrich-Heine-Universität Düsseldorf, Forschungszentrum Jülich, D-52425, Jülich, Germany. e.knieps@fz-juelich.de.
Astrid WirtzInstitute of Molecular Enzyme Technology, Heinrich-Heine-Universität Düsseldorf, Forschungszentrum Jülich, D-52425, Jülich, Germany. a.wirtz@fz-juelich.de.
Anneliese CousinInstitute of Complex Systems, ICS-6: Structural Biochemistry, Forschungszentrum Jülich, D-52425, Jülich, Germany. a.cousin@fz-juelich.de.
Petra TielenInstitute for Microbiology, Technische Universität Braunschweig, D-38106, Braunschweig, Germany. p.tielen@tu-bs.de.
Dieter WillboldInstitute of Complex Systems, ICS-6: Structural Biochemistry, Forschungszentrum Jülich, D-52425, Jülich, Germany. D.Willbold@fz-juelich.de.
Karl-Erich JaegerInstitute of Molecular Enzyme Technology, Heinrich-Heine-Universität Düsseldorf, Forschungszentrum Jülich, D-52425, Jülich, Germany. karl-erich.jaeger@fz-juelich.de.
Renu Batra-SafferlingInstitute of Complex Systems, ICS-6: Structural Biochemistry, Forschungszentrum Jülich, D-52425, Jülich, Germany. r.batra-safferling@fz-juelich.de.
Forschungszentrum Jülich · DEHeinrich Heine University Düsseldorf · DETechnische Universität Braunschweig · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLight, oxygen, voltage (LOV) domains are widely distributed in plants, algae, fungi, bacteria, and represent the photo-responsive domains of various blue-light photoreceptor proteins. Their photocycle involves the blue-light triggered adduct formation between the C(4a) atom of a non-covalently bound flavin chromophore and the sulfur atom of a conserved cysteine in the LOV sensor domain. LOV proteins show considerable variation in the structure of N- and C-terminal elements which flank the LOV core domain, as well as in the lifetime of the adduct state.

resultsHere, we report the photochemical, structural and functional characterization of DsLOV, a LOV protein from the photoheterotrophic marine α-proteobacterium Dinoroseobacter shibae which exhibits an average adduct state lifetime of 9.6 s at 20°C, and thus represents the fastest reverting bacterial LOV protein reported so far. Mutational analysis in D. shibae revealed a unique role of DsLOV in controlling the induction of photopigment synthesis in the absence of blue-light. The dark state crystal structure of DsLOV determined at 1.5 Å resolution reveals a conserved core domain with an extended N-terminal cap. The dimer interface in the crystal structure forms a unique network of hydrogen bonds involving residues of the N-terminus and the β-scaffold of the core domain. The structure of photoexcited DsLOV suggests increased flexibility in the N-cap region and a significant shift in the Cα backbone of β strands in the N- and C-terminal ends of the LOV core domain.

conclusionsThe results presented here cover the characterization of the unusual short LOV protein DsLOV from Dinoroseobacter shibae including its regulatory function, extremely fast dark recovery and an N-terminus mediated dimer interface. Due to its unique photophysical, structural and regulatory properties, DsLOV might thus serve as an alternative model system for studying light perception by LOV proteins and physiological responses in bacteria.

Indexed as

Aquatic OrganismsBacterial ProteinsCrystallizationCrystallography, X-RayDNA Mutational AnalysisModels, MolecularPhototrophic ProcessesPigments, BiologicalProtein ConformationProtein MultimerizationRhodobacteraceaeBacterial ProteinsPigments, Biological

Identifiers

PMID25887755
PMCPMC4335406
OpenAlexW2024173091

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.