Evidence map›Paper›PMID 25887684›Full record

ArticleGenome biology2015

The Fasciola hepatica genome: gene duplication and polymorphism reveals adaptation to the host environment and the capacity for rapid evolution.

Krystyna Cwiklinski, John Pius Dalton, Philippe J Dufresne, James La Course, Diana Jl Williams, Jane Hodgkinson, Steve Paterson

Open access · hybridAbstract read
In one paragraph

Article in Genome biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 145 papers.

0numbers the graph read from it
0cells of the map it votes in
145citing papers in PubMed
43.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

145 citing papers in PubMed, 281 citations in OpenAlex.

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85 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Krystyna CwiklinskiInstitute of Infection and Global Health, University of Liverpool, Liverpool, UK. K.Cwiklinski@qub.ac.uk.
John Pius DaltonSchool of Biological Sciences, Medical Biology Centre, Queen's University of Belfast, Belfast, Northern Ireland, UK. j.dalton@qub.ac.uk.
Philippe J DufresneInstitute of Parasitology, McGill University, Montreal, Quebec, Canada. Philippe.Dufresne@inspq.qc.ca.
James La CourseLiverpool School of Tropical Medicine, Liverpool, UK. James.LaCourse@lstmed.ac.uk.
Diana Jl WilliamsInstitute of Infection and Global Health, University of Liverpool, Liverpool, UK. williadj@liverpool.ac.uk.
Jane HodgkinsonInstitute of Infection and Global Health, University of Liverpool, Liverpool, UK. jhodgkin@liverpool.ac.uk.
Steve PatersonInstitute of Integrative Biology, University of Liverpool, Liverpool, UK. s.paterson@liv.ac.uk.
University of Liverpool · GBLiverpool School of Tropical Medicine · GBMcGill University · CAQueen's University Belfast · GB

Funding

Biotechnology and Biological Sciences Research Council BB1002480/1
6 · The paper itself

Abstract

backgroundThe liver fluke Fasciola hepatica is a major pathogen of livestock worldwide, causing huge economic losses to agriculture, as well as 2.4 million human infections annually.

resultsHere we provide a draft genome for F. hepatica, which we find to be among the largest known pathogen genomes at 1.3 Gb. This size cannot be explained by genome duplication or expansion of a single repeat element, and remains a paradox given the burden it may impose on egg production necessary to transmit infection. Despite the potential for inbreeding by facultative self-fertilisation, substantial levels of polymorphism were found, which highlights the evolutionary potential for rapid adaptation to changes in host availability, climate change or to drug or vaccine interventions. Non-synonymous polymorphisms were elevated in genes shared with parasitic taxa, which may be particularly relevant for the ability of the parasite to adapt to a broad range of definitive mammalian and intermediate molluscan hosts. Large-scale transcriptional changes, particularly within expanded protease and tubulin families, were found as the parasite migrated from the gut, across the peritoneum and through the liver to mature in the bile ducts. We identify novel members of anti-oxidant and detoxification pathways and defined their differential expression through infection, which may explain the stage-specific efficacy of different anthelmintic drugs.

conclusionsThe genome analysis described here provides new insights into the evolution of this important pathogen, its adaptation to the host environment and external selection pressures. This analysis also provides a platform for research into novel drugs and vaccines.

Indexed as

Adaptation, PhysiologicalAnimalsFasciola hepaticaFascioliasisGene DuplicationGene Expression ProfilingGenome, HelminthHost-Pathogen InteractionsHumansPolymorphism, Genetic

Identifiers

PMID25887684
PMCPMC4404566
OpenAlexW1971838305

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.