Evidence map›Paper›PMID 25887310›Full record

ArticleBMC cell biology2015

A novel myogenic function residing in the 5' non-coding region of Insulin receptor substrate-1 (Irs-1) transcript.

Hikaru Nagano, Naoko Yamagishi, Chisato Tomida, Chiaki Yano, Kana Aibara, Shohei Kohno, Tomoki Abe, Ayako Ohno, Katsuya Hirasaka, Yuushi Okumura and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC cell biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Recent Advances and Future Potential of Long Non-Coding RNAs in Insects.International journal of molecular sciences · 2023
    Review
  2. Review
  3. Review
  4. Insights into the Functions of LncRNAs inInternational journal of molecular sciences · 2019
    Review
  5. Review
  6. Article
  7. TheNon-coding RNA · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Hikaru NaganoDepartment of Nutritional Physiology, Institute of Health Biosciences, Tokushima University Graduate School, Tokushima, 770-8503, Japan. h_nagano1231@yahoo.co.jp.
Naoko YamagishiDepartment of Nutritional Physiology, Institute of Health Biosciences, Tokushima University Graduate School, Tokushima, 770-8503, Japan. yamagishin@affrc.go.jp.
Chisato TomidaDepartment of Nutritional Physiology, Institute of Health Biosciences, Tokushima University Graduate School, Tokushima, 770-8503, Japan. c201331003@tokushima-u.ac.jp.
Chiaki YanoDepartment of Nutritional Physiology, Institute of Health Biosciences, Tokushima University Graduate School, Tokushima, 770-8503, Japan. c201102013@tokushima-u.ac.jp.
Kana AibaraDepartment of Nutritional Physiology, Institute of Health Biosciences, Tokushima University Graduate School, Tokushima, 770-8503, Japan. kt.aibara@mopera.net.
Shohei KohnoDepartment of Nutritional Physiology, Institute of Health Biosciences, Tokushima University Graduate School, Tokushima, 770-8503, Japan. kohno@tokushima-u.ac.jp.
Tomoki AbeDepartment of Nutritional Physiology, Institute of Health Biosciences, Tokushima University Graduate School, Tokushima, 770-8503, Japan. t-abe@tokushima-u.ac.jp.
Ayako OhnoDepartment of Nutritional Physiology, Institute of Health Biosciences, Tokushima University Graduate School, Tokushima, 770-8503, Japan. ayako-o@nutr.med.tokushima-u.ac.jp.
Katsuya HirasakaGraduate school of Fisheries Science and Environmental Studies, Nagasaki University, Nagasaki, 852-8521, Japan. hirasaka@nagasaki-u.ac.jp.
Yuushi OkumuraFacalty of Nutritional Science, Sagami Women's University, Sagamihara, 252-0383, Japan. y-okumura@star.sagami-wu.ac.jp.
Edward M MillsDivision of Pharmacology/Toxicology, College of Pharmacy, University of Texas at Austin, Austin, Texas. ted_mills@mail.utexas.edu.
Takeshi NikawaDepartment of Nutritional Physiology, Institute of Health Biosciences, Tokushima University Graduate School, Tokushima, 770-8503, Japan. nikawa@tokushima-u.ac.jp.
Shigetada Teshima-KondoDepartment of Nutritional Physiology, Institute of Health Biosciences, Tokushima University Graduate School, Tokushima, 770-8503, Japan. kondoshi@nutr.med.tokushima-u.ac.jp.
Tokushima University · JPNagasaki University · JPSagami Women's University · JPThe University of Texas at Austin · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThere is evidence that several messenger RNAs (mRNAs) are bifunctional RNAs, i.e. RNA transcript carrying both protein-coding capacity and activity as functional non-coding RNA via 5' and 3' untranslated regions (UTRs).

resultsIn this study, we identified a novel bifunctional RNA that is transcribed from insulin receptor substrate-1 (Irs-1) gene with full-length 5'UTR sequence (FL-Irs-1 mRNA). FL-Irs-1 mRNA was highly expressed only in skeletal muscle tissue. In cultured skeletal muscle C2C12 cells, the FL-Irs-1 transcript functioned as a bifunctional mRNA. The FL-Irs-1 transcript produced IRS-1 protein during differentiation of myoblasts into myotubes; however, this transcript functioned as a regulatory RNA in proliferating myoblasts. The FL-Irs-1 5'UTR contains a partial complementary sequence to Rb mRNA, which is a critical factor for myogenic differentiation. The overexpression of the 5'UTR markedly reduced Rb mRNA expression, and this reduction was fully dependent on the complementary element and was not compensated by IRS-1 protein. Conversely, knockdown of FL-Irs-1 mRNA increased Rb mRNA expression and enhanced myoblast differentiation into myotubes.

conclusionsOur findings suggest that the FL-Irs-1 transcript regulates myogenic differentiation as a regulatory RNA in myoblasts.

Indexed as

5' Untranslated RegionsAnimalsBase SequenceCell DifferentiationCell LineInsulin Receptor Substrate ProteinsMiceMuscle, SkeletalMyoblastsRetinoblastoma ProteinRNA InterferenceRNA, MessengerRNA, Small InterferingSequence Alignment5' Untranslated RegionsInsulin Receptor Substrate ProteinsIrs1 protein, mouseRetinoblastoma ProteinRNA, MessengerRNA, Small Interfering

Identifiers

PMID25887310
PMCPMC4373113
OpenAlexW1997521399

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.