Evidence map›Paper›PMID 25887180›Full record

ArticleBMC evolutionary biology2015

Evidence that natural selection maintains genetic variation for sleep in Drosophila melanogaster.

Nicolas Svetec, Li Zhao, Perot Saelao, Joanna C Chiu, David J Begun

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  8. Article
  9. bioRxiv : the preprint server for biology · 2024
    Article
  10. Article
  11. Article
  12. How Temperature Influences Sleep.International journal of molecular sciences · 2022
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. The origins and evolution of sleep.The Journal of experimental biology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Nicolas SvetecDepartment of Evolution and Ecology, University of California, 3352 Storer Hall, One Shields Ave., Davis, CA, 95618, USA. nhsvetec@ucdavis.edu.
Li ZhaoDepartment of Evolution and Ecology, University of California, 3352 Storer Hall, One Shields Ave., Davis, CA, 95618, USA. lizzhao@ucdavis.edu.
Perot SaelaoDepartment of Evolution and Ecology, University of California, 3352 Storer Hall, One Shields Ave., Davis, CA, 95618, USA. psaelao@ucdavis.edu.
Joanna C ChiuDepartment of Entomology and Nematology, University of California, Davis, CA, USA. jcchiu@ucdavis.edu.
David J BegunDepartment of Evolution and Ecology, University of California, 3352 Storer Hall, One Shields Ave., Davis, CA, 95618, USA. djbegun@ucdavis.edu.
University of California, Davis · US

Funding

Investigating de novo gene evolution in Drosophila melanogasterR01GM110258 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BEGUN, DAVID J · 2015 to 2018
$1.6M
The role of DBT and NEMO-dependent phosphoproteome in regulating animal clockworkR01GM102225 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CHIU, JOANNA CHUNGYEN · 2013 to 2017
$1.4M
Genomic analysis of adaptation in DrosophilaR01GM084056 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BEGUN, DAVID J · 2009 to 2012
$1.2M
NIGMS NIH HHS GM084056NIGMS NIH HHS GM102225NIGMS NIH HHS GM110258NIGMS NIH HHS R01 GM084056NIGMS NIH HHS R01 GM102225NIGMS NIH HHS R01 GM110258
6 · The paper itself

Abstract

backgroundDrosophila melanogaster often shows correlations between latitude and phenotypic or genetic variation on different continents, which suggests local adaptation with respect to a heterogeneous environment. Previous phenotypic analyses of latitudinal clines have investigated mainly physiological, morphological, or life-history traits. Here, we studied latitudinal variation in sleep in D. melanogaster populations from North and Central America. In parallel, we used RNA-seq to identify interpopulation gene expression differences.

resultsWe found that in D. melanogaster the average nighttime sleep bout duration exhibits a latitudinal cline such that sleep bouts of equatorial populations are roughly twice as long as those of temperate populations. Interestingly, this pattern of latitudinal variation is not observed for any daytime measure of activity or sleep. We also found evidence for geographic variation for sunrise anticipation. Our RNA-seq experiment carried out on heads from a low and high latitude population identified a large number of gene expression differences, most of which were time dependent. Differentially expressed genes were enriched in circadian regulated genes and enriched in genes potentially under spatially varying selection.

conclusionOur results are consistent with a mechanistic and selective decoupling of nighttime and daytime activity. Furthermore, the present study suggests that natural selection plays a major role in generating transcriptomic variation associated with circadian behaviors. Finally, we identified genomic variants plausibly causally associated with the observed behavioral and transcriptomic variation.

Indexed as

SleepTranscriptomeAcclimatizationAnimalsClimateDrosophila melanogasterFemaleGeographyMaleModels, AnimalPanamaSelection, GeneticUnited States

Identifiers

PMID25887180
PMCPMC4374177
OpenAlexW2063164614

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.