Evidence map›Paper›PMID 25886994›Full record

ArticleBMC immunology2015

MicroRNA signatures differentiate Crohn's disease from ulcerative colitis.

Jeremy S Schaefer, Taraq Attumi, Antone R Opekun, Bincy Abraham, Jason Hou, Harold Shelby, David Y Graham, Charles Streckfus, John R Klein

Open access · goldAbstract read
In one paragraph

Article in BMC immunology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed, 3 pooled it
14.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 3 syntheses or guidelines pooled it, 176 citations in OpenAlex.

  1. Pooled it
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  7. Dissecting the small RNA code of inflammatory bowel disease.Molecular medicine (Cambridge, Mass.) · 2026
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54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Jeremy S SchaeferDepartment of Diagnostic and Biomedical Sciences, The University of Texas Health Science Center at Houston School of Dentistry, Houston, TX, 77054, USA. Jeremy.Schaefer@uth.tmc.edu.
Taraq AttumiDepartment of Medicine, Baylor College of Medicine, Houston, TX, USA. attumi2002@yahoo.com.
Antone R OpekunDepartment of Medicine, Baylor College of Medicine, Houston, TX, USA. aopekun@bcm.edu.
Bincy AbrahamDepartment of Medicine, Baylor College of Medicine, Houston, TX, USA. bincya@bcm.edu.
Jason HouDepartment of Medicine, Baylor College of Medicine, Houston, TX, USA. jkhou@bcm.edu.
Harold ShelbyDepartment of Medicine, Baylor College of Medicine, Houston, TX, USA. htshelby@bcm.edu.
David Y GrahamDepartment of Medicine, Baylor College of Medicine, Houston, TX, USA. dgraham@bcm.edu.
Charles StreckfusDepartment of Diagnostic and Biomedical Sciences, The University of Texas Health Science Center at Houston School of Dentistry, Houston, TX, 77054, USA. Charles.Streckfus@uth.tmc.edu.
John R KleinDepartment of Diagnostic and Biomedical Sciences, The University of Texas Health Science Center at Houston School of Dentistry, Houston, TX, 77054, USA. John.R.Klein@uth.tmc.edu.
Michael E. DeBakey VA Medical Center · USThe University of Texas Health Science Center · USBaylor College of Medicine · US

Funding

Tissue Analysis & Molecular Imaging CoreP30DK056338 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI Geoffrey A Preidis · 2001 to 2026
$28.3M
GUT-DERIVED IMMUNE EFFECTOR CELLSR01DK035566 · NIDDK · UNIVERSITY OF TULSA · PI KLEIN, JOHN R · 1988 to 2012
$2.9M
Immunity in TSH-beta splice variant-deficient miceR03AI100159 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI KLEIN, JOHN R · 2012 to 2013
$152k
GUT-DERIVED IMMUNE EFFECTOR CELLSR23DK035566 · NIDDK · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI KLEIN, JOHN R · 1986 to 1987
–
NIAID NIH HHS AI100159NIAID NIH HHS R03 AI100159NIDDK NIH HHS DK035566NIDDK NIH HHS DK56338NIDDK NIH HHS P30 DK056338NIDDK NIH HHS P30 DK56338NIDDK NIH HHS R01 DK035566
6 · The paper itself

Abstract

backgroundExcessive and inappropriate immune responses are the hallmark of several autoimmune disorders, including the inflammatory bowel diseases (IBD): Crohn's disease (CD) and ulcerative colitis (UC). A complex etiology involving both environmental and genetic factors influences IBD pathogenesis. The role of microRNAs (miRNAs), noncoding RNAs involved in regulating numerous biological processes, to IBD pathology, in terms of initiation and progression, remains ill-defined. In the present study, we evaluated the relationship between colon, peripheral blood, and saliva whole miRNome expression in IBD patients and non-inflammatory bowel disease (non-IBD) controls to identify miRNAs that could discriminate CD from UC. Quantitative real-time PCR (qRT-PCR) was used to validate and assess miRNA expression.

resultsMicroarray analysis demonstrated that upwards of twenty six miRNAs were changed in CD and UC colon biopsies relative to the non-IBD controls. CD was associated with the differential expression of 10 miRNAs while UC was associated with 6 miRNAs in matched colon tissues. CD was associated with altered expression of 6 miRNAs while UC was associated with 9 miRNAs in whole blood. Expression of miR-101 in CD patients and miR-21, miR-31, miR-142-3p, and miR-142-5p in UC patients were altered in saliva.

conclusionsOur results suggest that there is specific miRNA expression patterns associated with UC versus CD in three separate tissue/body fluids (colon, blood, and saliva). Further, the aberrant miRNA expression profiles indicate that miRNAs may be contributory to IBD pathogenesis, or at least reflect the underlying inflammation. Scrutinizing miRNA expression in saliva and blood samples may be beneficial in monitoring or diagnosing disease in IBD patients. A panel of miRNAs (miR-19a, miR-21, miR-31, miR-101, miR-146a, and miR-375) may be used as markers to identify and discriminate between CD and UC.

Indexed as

AdolescentAdultAgedAged, 80 and overAutophagy-Related ProteinsBiomarkersBiopsyBlood CellsCarrier ProteinsColitis, UlcerativeColonCrohn DiseaseDiagnosis, DifferentialFemaleGene-Environment InteractionGene Expression RegulationATG16L1 protein, humanAutophagy-Related ProteinsBiomarkersCarrier ProteinsMicroRNAsRC3H1 protein, humanRNA-Binding ProteinsUbiquitin-Protein Ligases

Identifiers

PMID25886994
PMCPMC4335694
OpenAlexW2086907971

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.