Evidence map›Paper›PMID 25886910›Full record

ArticleGenes & development2015

Loss of TET2 in hematopoietic cells leads to DNA hypermethylation of active enhancers and induction of leukemogenesis.

Kasper D Rasmussen, Guangshuai Jia, Jens V Johansen, Marianne T Pedersen, Nicolas Rapin, Frederik O Bagger, Bo T Porse, Olivier A Bernard, Jesper Christensen, Kristian Helin

Registry-linked trialOpen access · diamondAbstract read
In one paragraph

Article in Genes & development, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03217903 (High Risk Myelodysplasia Treated by Azacytidine), which is not on this map. Cited by 182 papers.

0numbers the graph read from it
0cells of the map it votes in
182citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03217903 naunknown statusnot on this mapstarted 2017, after this paper: background citation

High Risk Myelodysplasia Treated by Azacytidine : Genetic and Epigenetic (MYRAGE)

TypeinterventionalSponsorCentral Hospital, Nancy, FranceRan2017 to 2022Enrolled32ConditionsHigh-risk Myelodysplastic Syndromes With Excess BlastsArmsMyelogram
3 · Its place in the literature

Who cites it

182 citing papers in PubMed, 260 citations in OpenAlex.

  1. Trial
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  4. Article
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  9. RNA modification systems as therapeutic targets.Nature reviews. Drug discovery · 2026
    Review
  10. Article
  11. Article
  12. Targeting RUNX1 Germline Variants: Agents Under Investigation.Current hematologic malignancy reports · 2025
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
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  20. Review

122 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Kasper D RasmussenBiotech Research and Innovation Centre (BRIC), University of Copenhagen, 2200 Copenhagen, Denmark; Centre for Epigenetics, University of Copenhagen, 2200 Copenhagen, Denmark;
Guangshuai JiaBiotech Research and Innovation Centre (BRIC), University of Copenhagen, 2200 Copenhagen, Denmark; Centre for Epigenetics, University of Copenhagen, 2200 Copenhagen, Denmark;
Jens V JohansenBiotech Research and Innovation Centre (BRIC), University of Copenhagen, 2200 Copenhagen, Denmark;
Marianne T PedersenBiotech Research and Innovation Centre (BRIC), University of Copenhagen, 2200 Copenhagen, Denmark; Centre for Epigenetics, University of Copenhagen, 2200 Copenhagen, Denmark;
Nicolas RapinBiotech Research and Innovation Centre (BRIC), University of Copenhagen, 2200 Copenhagen, Denmark; The Danish Stem Cell Center (Danstem), University of Copenhagen, 2200 Copenhagen, Denmark; Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen, Denmark; The Finsen Laboratory, Rigshospitalet, 2200 Copenhagen, Denmark;
Frederik O BaggerBiotech Research and Innovation Centre (BRIC), University of Copenhagen, 2200 Copenhagen, Denmark; The Danish Stem Cell Center (Danstem), University of Copenhagen, 2200 Copenhagen, Denmark; Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen, Denmark; The Finsen Laboratory, Rigshospitalet, 2200 Copenhagen, Denmark;
Bo T PorseBiotech Research and Innovation Centre (BRIC), University of Copenhagen, 2200 Copenhagen, Denmark; The Danish Stem Cell Center (Danstem), University of Copenhagen, 2200 Copenhagen, Denmark; Faculty of Health Sciences, University of Copenhagen, 2200 Copenhagen, Denmark; The Finsen Laboratory, Rigshospitalet, 2200 Copenhagen, Denmark;
Olivier A BernardINSERM U985, Institut Gustave Roussy, 94805 Villejuif, France.
Jesper ChristensenBiotech Research and Innovation Centre (BRIC), University of Copenhagen, 2200 Copenhagen, Denmark; Centre for Epigenetics, University of Copenhagen, 2200 Copenhagen, Denmark;
Kristian HelinBiotech Research and Innovation Centre (BRIC), University of Copenhagen, 2200 Copenhagen, Denmark; Centre for Epigenetics, University of Copenhagen, 2200 Copenhagen, Denmark; The Danish Stem Cell Center (Danstem), University of Copenhagen, 2200 Copenhagen, Denmark; kristian.helin@bric.ku.dk.
University of Copenhagen · DKInserm · FR

Funding

European Research Council 294666
6 · The paper itself

Abstract

DNA methylation is tightly regulated throughout mammalian development, and altered DNA methylation patterns are a general hallmark of cancer. The methylcytosine dioxygenase TET2 is frequently mutated in hematological disorders, including acute myeloid leukemia (AML), and has been suggested to protect CG dinucleotide (CpG) islands and promoters from aberrant DNA methylation. In this study, we present a novel Tet2-dependent leukemia mouse model that closely recapitulates gene expression profiles and hallmarks of human AML1-ETO-induced AML. Using this model, we show that the primary effect of Tet2 loss in preleukemic hematopoietic cells is progressive and widespread DNA hypermethylation affecting up to 25% of active enhancer elements. In contrast, CpG island and promoter methylation does not change in a Tet2-dependent manner but increases relative to population doublings. We confirmed this specific enhancer hypermethylation phenotype in human AML patients with TET2 mutations. Analysis of immediate gene expression changes reveals rapid deregulation of a large number of genes implicated in tumorigenesis, including many down-regulated tumor suppressor genes. Hence, we propose that TET2 prevents leukemic transformation by protecting enhancers from aberrant DNA methylation and that it is the combined silencing of several tumor suppressor genes in TET2 mutated hematopoietic cells that contributes to increased stem cell proliferation and leukemogenesis.

Indexed as

Gene Expression Regulation, NeoplasticAnimalsCarcinogenesisCell ProliferationDioxygenasesDNA-Binding ProteinsDNA MethylationEnhancer Elements, GeneticHematopoietic Stem CellsHumansMiceMutationProto-Oncogene ProteinsTranslocation, GeneticDioxygenasesDNA-Binding ProteinsProto-Oncogene ProteinsTet2 protein, mouseDNA methylationenhancerleukemiaTET2

Identifiers

PMID25886910
PMCPMC4421980
OpenAlexW2169012047

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.