Evidence map›Paper›PMID 25886849›Full record

ArticleBMC structural biology2015

High-resolution structure of a type IV pilin from the metal-reducing bacterium Shewanella oneidensis.

Manuela Gorgel, Jakob Jensen Ulstrup, Andreas Bøggild, Nykola C Jones, Søren V Hoffmann, Poul Nissen, Thomas Boesen

Open access · hybridAbstract read
In one paragraph

Article in BMC structural biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Type IV pili ofEcoSal Plus · 2024
    Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Article
  9. The electrically conductive pili ofMicrobial genomics · 2016
    Article
  10. Comparative Analysis of Type IV Pilin inFrontiers in microbiology · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Manuela GorgelDepartment of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10c, Aarhus C, 8000, Denmark. manuela@mbg.au.dk.
Jakob Jensen UlstrupDepartment of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10c, Aarhus C, 8000, Denmark. jakobu@mbg.au.dk.
Andreas BøggildDepartment of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10c, Aarhus C, 8000, Denmark. anbog@mbg.au.dk.
Nykola C JonesISA, Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, building 1525, Aarhus C, 8000, Denmark. nykj@phys.au.dk.
Søren V HoffmannISA, Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, building 1525, Aarhus C, 8000, Denmark. vronning@phys.au.dk.
Poul NissenDepartment of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10c, Aarhus C, 8000, Denmark. pn@mbg.au.dk.
Thomas BoesenDepartment of Molecular Biology and Genetics, Aarhus University, Gustav Wieds Vej 10c, Aarhus C, 8000, Denmark. thb@mbg.au.dk.
Aarhus University · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundType IV pili are widely expressed among Gram-negative bacteria, where they are involved in biofilm formation, serve in the transfer of DNA, motility and in the bacterial attachment to various surfaces. Type IV pili in Shewanella oneidensis are also supposed to play an important role in extracellular electron transfer by the attachment to sediments containing electron acceptors and potentially forming conductive nanowires.

resultsThe potential nanowire type IV pilin PilBac1 from S. oneidensis was characterized by a combination of complementary structural methods and the atomic structure was determined at a resolution of 1.67 Å by X-ray crystallography. PilBac1 consists of one long N-terminal α-helix packed against four antiparallel β-strands, thus revealing the core fold of type IV pilins. In the crystal, PilBac1 forms a parallel dimer with a sodium ion bound to one of the monomers. Interestingly, our PilBac1 crystal structure reveals two unusual features compared to other type IVa pilins: an unusual position of the disulfide bridge and a straight α-helical section, which usually exhibits a pronounced kink. This straight helix leads to a distinct packing in a filament model of PilBac1 based on an EM model of a Neisseria pilus.

conclusionsIn this study we have described the first structure of a pilin from Shewanella oneidensis. The structure possesses features of the common type IV pilin core, but also exhibits significant variations in the α-helical part and the D-region.

Indexed as

Crystallography, X-RayFimbriae, BacterialFimbriae ProteinsModels, MolecularProtein Structure, SecondarySequence Homology, Amino AcidShewanellaFimbriae Proteins

Identifiers

PMID25886849
PMCPMC4376143
OpenAlexW2127477894

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.