Evidence map›Paper›PMID 25886815›Full record

ArticleBMC genomics2015

Pistillody mutant reveals key insights into stamen and pistil development in wheat (Triticum aestivum L.).

Zaijun Yang, Zhengsong Peng, Shuhong Wei, Mingli Liao, Yan Yu, Zeyan Jang

Abstract read
In one paragraph

Article in BMC genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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  12. Modulation of Gene Expression in Liver of Hibernating Asiatic Toads (International journal of molecular sciences · 2018
    Article
  13. Article
  14. Article
  15. Transcriptome Analysis of theFrontiers in plant science · 2017
    Article
  16. Article
  17. Transcriptome Analysis of theFrontiers in plant science · 2016
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zaijun YangKey Laboratory of Southwest China Wildlife Resources Conservation, College of Life Science, China West Normal University, Nanchong, 637009, , Sichuan, China. zaijunyang@cwnu.edu.cn.
Zhengsong PengKey Laboratory of Southwest China Wildlife Resources Conservation, College of Life Science, China West Normal University, Nanchong, 637009, , Sichuan, China. pzs8833@163.com.
Shuhong WeiKey Laboratory of Southwest China Wildlife Resources Conservation, College of Life Science, China West Normal University, Nanchong, 637009, , Sichuan, China. weishuhong453@sohu.com.
Mingli LiaoKey Laboratory of Southwest China Wildlife Resources Conservation, College of Life Science, China West Normal University, Nanchong, 637009, , Sichuan, China. liao115723@163.com.
Yan YuKey Laboratory of Southwest China Wildlife Resources Conservation, College of Life Science, China West Normal University, Nanchong, 637009, , Sichuan, China. smallfishone2005@126.com.
Zeyan JangKey Laboratory of Southwest China Wildlife Resources Conservation, College of Life Science, China West Normal University, Nanchong, 637009, , Sichuan, China. 741302069@qq.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe pistillody mutant wheat (Triticum aestivum L.) plant HTS-1 exhibits homeotic transformation of stamens into pistils or pistil-like structures. Unlike common wheat varieties, HTS-1 produces three to six pistils per floret, potentially increasing the yield. Thus, HTS-1 is highly valuable in the study of floral development in wheat. In this study, we conducted RNA sequencing of the transcriptomes of the pistillody stamen (PS) and the pistil (P) from HTS-1 plants, and the stamen (S) from the non-pistillody control variety Chinese Spring TP to gain insights into pistil and stamen development in wheat.

resultsApproximately 40 Gb of processed reads were obtained from PS, P, and S. De novo assembly yielded 121,210 putative unigenes, with a mean length of 695 bp. Among these high-quality unigenes, 59,199 (48.84%) had at least one significant match with an existing gene model. A total of 23, 263, and 553 differentially expressed genes were identified in PS vs. P, PS vs. S, and P vs. S, respectively, with differences in expression greater than five-fold. Among the differentially expressed genes, 206 were highly correlated with stamen and pistil development. These genes include WM27B, DL, YAB1, YABBY4, WM 5, CER 1, and WBLH1, which have been implicated in flower development. The expression patterns of 25 differentially expressed genes were confirmed through quantitative real-time reverse transcription PCR.

conclusionsAnalysis of this transcriptome resource enabled us to characterize gene expression profiles, examine differential gene expression, and produce a candidate gene list related to wheat stamen and pistil development. This work is significant for the development of genomic resources for wheat, and provides important insights into the molecular mechanisms of wheat stamen and pistil development.

Indexed as

MutationComputational BiologyFlowersGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantHigh-Throughput Nucleotide SequencingMolecular Sequence AnnotationPhenotypeTranscriptomeTriticum

Identifiers

PMID25886815
PMCPMC4369888

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.