Evidence map›Paper›PMID 25886456›Full record

ArticleMicrobial cell factories2015

Identification of a cluster-situated activator of oxytetracycline biosynthesis and manipulation of its expression for improved oxytetracycline production in Streptomyces rimosus.

Shouliang Yin, Weishan Wang, Xuefeng Wang, Yaxin Zhu, Xiaole Jia, Shanshan Li, Fang Yuan, Yuxiu Zhang, Keqian Yang

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 64 citations in OpenAlex.

  1. The Oxytetracycline ProducerInternational journal of molecular sciences · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Metabolic engineering ofEngineering microbiology · 2022
    Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Development of aJournal of Zhejiang University. Science. B · 2021
    Article
  15. Article
  16. Article
  17. Review
  18. The regulatory cascades of antibiotic production in Streptomyces.World journal of microbiology & biotechnology · 2020
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Shouliang YinDepartment of Environmental and Biological Engineering, School of Chemical and Environmental Engineering, China University of Mining and Technology (Beijing), D11 Xueyuan Road, Haidian District, Beijing, 100083, People's Republic of China. yinsl@student.cumtb.edu.cn.
Weishan WangState Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, 1 Beichen West Road, Chaoyang District, Beijing, 100101, People's Republic of China. wangws@im.ac.cn.
Xuefeng WangShengxue Dacheng Pharmaceutical Co., Ltd, 50 Shengxue Road, Shijiazhuang, 051430, Hebei, People's Republic of China. wangxuefeng1982@163.com.
Yaxin ZhuState Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, 1 Beichen West Road, Chaoyang District, Beijing, 100101, People's Republic of China. zhuyx@im.ac.cn.
Xiaole JiaShengxue Dacheng Pharmaceutical Co., Ltd, 50 Shengxue Road, Shijiazhuang, 051430, Hebei, People's Republic of China. nj_jxl@126.com.
Shanshan LiState Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, 1 Beichen West Road, Chaoyang District, Beijing, 100101, People's Republic of China. lishanshan8427@gmail.com.
Fang YuanShengxue Dacheng Pharmaceutical Co., Ltd, 50 Shengxue Road, Shijiazhuang, 051430, Hebei, People's Republic of China. bcd163@163.com.
Yuxiu ZhangDepartment of Environmental and Biological Engineering, School of Chemical and Environmental Engineering, China University of Mining and Technology (Beijing), D11 Xueyuan Road, Haidian District, Beijing, 100083, People's Republic of China. zhangyuxiu@cumtb.edu.cn.
Keqian YangState Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, 1 Beichen West Road, Chaoyang District, Beijing, 100101, People's Republic of China. yangkq@im.ac.cn.
Regenex Pharmaceuticals (China) · CNChina University of Mining and Technology · CNChinese Academy of Sciences · CNInstitute of Microbiology · CNMicrobiology Institute of Shaanxi · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOxytetracycline (OTC) is a broad-spectrum antibiotic commercially produced by Streptomyces rimosus. Despite its importance, little is known about the regulation of OTC biosynthesis, which hampered any effort to improve OTC production via engineering regulatory genes.

resultsA gene encoding a Streptomyces antibiotic regulatory protein (SARP) was discovered immediately adjacent to the otrB gene of oxy cluster in S. rimosus and designated otcR. Deletion and complementation of otcR abolished or restored OTC production, respectively, indicating that otcR encodes an essential activator of OTC biosynthesis. Then, the predicted consensus SARP-binding sequences were extracted from the promoter regions of oxy cluster. Transcriptional analysis in a heterologous GFP reporter system demonstrated that OtcR directly activated the transcription of five oxy promoters in E. coli, further mutational analysis of a SARP-binding sequence of oxyI promoter proved that OtcR directly interacted with the consensus repeats. Therefore, otcR was chosen as an engineering target, OTC production was significantly increased by overexpression of otcR as tandem copies each under the control of strong SF14 promoter.

conclusionsA SARP activator, OtcR, was identified in oxy cluster of S. rimosus; it was shown to directly activate five promoters from oxy cluster. Overexpression of otcR at an appropriate level dramatically increased OTC production by 6.49 times compared to the parental strain, thus demonstrating the great potential of manipulating OtcR to improve the yield of OTC production.

Indexed as

Gene Expression Regulation, BacterialAmino Acid SequenceBacterial ProteinsBase SequenceBinding SitesEscherichia coliMolecular Sequence DataMultigene FamilyMutationOxytetracyclinePromoter Regions, GeneticProtein BindingSequence Homology, Amino AcidStreptomyces rimosusTranscription, GeneticBacterial ProteinsOxytetracycline

Identifiers

PMID25886456
PMCPMC4393881
OpenAlexW2109406881

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.