Evidence map›Paper›PMID 25886387›Full record

ArticlePloS one2015

Rare variants in MYD88, IRAK4 and IKBKG and susceptibility to invasive pneumococcal disease: a population-based case-control study.

Magda K Ellis, Katherine S Elliott, Anna Rautanen, Derrick W Crook, Adrian V S Hill, Stephen J Chapman

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.4field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 3 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Magda K EllisWellcome Trust Centre for Human Genetics, University of Oxford, United Kingdom; Queensland Institute of Medical Research, Brisbane, Australia; Centenary Institute and Sydney Medical School, University of Sydney, Sydney Australia.
Katherine S ElliottWellcome Trust Centre for Human Genetics, University of Oxford, United Kingdom.
Anna RautanenWellcome Trust Centre for Human Genetics, University of Oxford, United Kingdom.
Derrick W CrookDepartment of Microbiology, John Radcliffe Hospital, Oxford, United Kingdom.
Adrian V S HillWellcome Trust Centre for Human Genetics, University of Oxford, United Kingdom.
Stephen J ChapmanWellcome Trust Centre for Human Genetics, University of Oxford, United Kingdom; Oxford Centre for Respiratory Medicine, Churchill Hospital Site, Oxford University Hospitals, Oxford, United Kingdom.
Centre for Human Genetics · GBChurchill Hospital · GBJohn Radcliffe Hospital · GB

Funding

Medical Research Council G1001712Wellcome TrustWellcome Trust 076113/C/04/ZWellcome Trust 090532/Z/09/Z
6 · The paper itself

Abstract

Although rare variants within the Toll-like receptor signalling pathway genes have been found to underlie human primary immunodeficiencies associated with selective predisposition to invasive pneumococcal disease (IPD), the contribution of variants in these genes to IPD susceptibility at the population level remains unknown. Complete re-sequencing of IRAK4, MYD88 and IKBKG genes was undertaken in 164 IPD cases from the UK and 164 geographically-matched population-based controls. 233 single-nucleotide variants (SNVs) were identified, of which ten were in coding regions. Four rare coding variants were predicted to be deleterious, two variants in MYD88 and two in IRAK4. The predicted deleterious variants in MYD88 were observed as two heterozygote cases but not seen in controls. Frequencies of predicted deleterious IRAK4 SNVs were the same in cases and controls. Our findings suggest that rare, functional variants in MYD88, IRAK4 or IKBKG do not significantly contribute to IPD susceptibility in adults at the population level.

Indexed as

Genetic Predisposition to DiseaseCase-Control StudiesHumansI-kappa B KinaseInterleukin-1 Receptor-Associated KinasesMutation, MissenseMyeloid Differentiation Factor 88Pneumococcal InfectionsStreptococcus pneumoniaeI-kappa B KinaseIKBKG protein, humanInterleukin-1 Receptor-Associated KinasesIRAK4 protein, humanMYD88 protein, humanMyeloid Differentiation Factor 88

Identifiers

PMID25886387
PMCPMC4401548
OpenAlexW2078342666

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.