Evidence map›Paper›PMID 25886383›Full record

ArticleBMC microbiology2015

Candidate proteomic biomarkers for three genogroups of the swine pathogen Streptococcus suis serotype 2.

Christo Atanassov, Laetitia Bonifait, Marylise Perivier, Marcelo Gottschalk, Daniel Grenier

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.3field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Christo AtanassovLaboratoire de Bactériologie-Hygiène, Centre Hospitalier Universitaire de Poitiers, Poitiers, France. h.atanassov@chu-poitiers.fr.
Laetitia BonifaitGroupe de Recherche en Écologie Buccale, Faculté de Médecine Dentaire, Université Laval, 2420 de la Terrasse, Quebec City, QC, G1V 0A6, Canada. laetitia.bonifait@criucpq.ulaval.ca.
Marylise PerivierEA 4331 LITEC, Pôle Biologie-Santé, Université de Poitiers, Poitiers, France. marylise.perivier@gmail.com.
Marcelo GottschalkGroupe de Recherche sur les Maladies Infectieuses du Porc, Faculté de Médecine Vétérinaire, Université de Montréal, Saint-Hyacinthe, QC, Canada. marcelo.gottschalk@umontreal.ca.
Daniel GrenierGroupe de Recherche en Écologie Buccale, Faculté de Médecine Dentaire, Université Laval, 2420 de la Terrasse, Quebec City, QC, G1V 0A6, Canada. daniel.grenier@greb.ulaval.ca.
Université de Poitiers · FRCentre de Recherche Industrielle du Québec · CAFonds de Recherche du Québec - Santé · CAUniversité Laval · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundStreptococcus suis, more specifically serotype 2, is a major swine pathogen and an emerging zoonotic agent that causes severe infections such as meningitis, endocarditis, and septicemia. In this study, surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI) was used to investigate the protein expression profiles of 45 strains of S. suis serotype 2 that had previously been clustered by multilocus sequence typing (MLST) into three sequence types (ST1, ST25, and ST28) (n = 15 for each ST).

resultsThe SELDI data were analyzed using the univariate Mann-Whitney and Kruskal-Wallis tests and multivariate statistical methods (heatmap/hierarchical clustering). The heatmap identified 136 cell proteins, and hierarchical clustering provided a 100% correct classification of all fifteen ST1 and ST25 strains and thirteen of the fifteen ST28 strains (87% correct). The univariate statistical analyses of the SELDI protein expression profiles identified nine significant proteins that discriminated the strains of the three STs of S. suis. Of these proteins, two were overexpressed in ST1 (5958 Da and 10249 Da), four in ST25 (5989 Da, 6646 Da, 7421 Da, and 9825 Da), and three in ST28 (4516 Da, 7833 Da, and 9342 Da). Two of the proteins associated with the ST28 strains (p4516 and p9342) were purified and were identified as a putative ABC transporter and a nucleoid-DNA-binding protein, respectively.

conclusionsSELDI analysis of 45 strains of S. suis allowed to identify nine statistically significant proteins that can be specifically correlated with either ST1, ST25 or ST28. The possible involvement of the overexpressed proteins in the pathology of S. suis infections will require further investigation.

Indexed as

AnimalsBacterial ProteinsBiomarkersCluster AnalysisGene Expression Regulation, BacterialGenotypeProteomicsSpecies SpecificitySpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationStreptococcal InfectionsStreptococcus suisSwineSwine DiseasesBacterial ProteinsBiomarkers

Identifiers

PMID25886383
PMCPMC4450453
OpenAlexW2139880587

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.