Evidence map›Paper›PMID 25885539›Full record

ArticleVeterinary research2015

Changes in cellular microRNA expression induced by porcine circovirus type 2-encoded proteins.

Jae-Sang Hong, Nam-Hoon Kim, Chang-Yong Choi, Jun-Seong Lee, Dokyun Na, Taehoon Chun, Young Sik Lee

Open access · goldAbstract read
In one paragraph

Article in Veterinary research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Jae-Sang HongCollege of Life Sciences and Biotechnology, Korea University, Seoul, 136-713, Korea. jsf7205@korea.ac.kr.
Nam-Hoon KimCollege of Life Sciences and Biotechnology, Korea University, Seoul, 136-713, Korea. knh1221@korea.ac.kr.
Chang-Yong ChoiCollege of Life Sciences and Biotechnology, Korea University, Seoul, 136-713, Korea. magical87@naver.com.
Jun-Seong LeeCollege of Life Sciences and Biotechnology, Korea University, Seoul, 136-713, Korea. tturr@hanmail.net.
Dokyun NaSchool of Integrative Engineering, Chung-Ang University, Seoul, 156-756, Korea. dokyunna@gmail.com.
Taehoon ChunCollege of Life Sciences and Biotechnology, Korea University, Seoul, 136-713, Korea. tchun@korea.ac.kr.
Young Sik LeeCollege of Life Sciences and Biotechnology, Korea University, Seoul, 136-713, Korea. ys-lee@korea.ac.kr.
Korea University · KRChung-Ang University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porcine circovirus type 2 (PCV2) is the primary causative agent of postweaning multisystemic wasting syndrome, which leads to serious economic losses in the pig industry worldwide. While the molecular basis of PCV2 replication and pathogenicity remains elusive, it is increasingly apparent that the microRNA (miRNA) pathway plays a key role in controlling virus-host interactions, in addition to a wide range of cellular processes. Here, we employed Solexa deep sequencing technology to determine which cellular miRNAs were differentially regulated after expression of each of three PCV2-encoded open reading frames (ORFs) in porcine kidney epithelial (PK15) cells. We identified 51 ORF1-regulated miRNAs, 74 ORF2-regulated miRNAs, and 32 ORF3-regulated miRNAs that differed in abundance compared to the control. Gene ontology analysis of the putative targets of these miRNAs identified transcriptional regulation as the most significantly enriched biological process, while KEGG pathway analysis revealed significant enrichment for several pathways including MAPK signaling, which is activated during PCV2 infection. Among the potential target genes of ORF-regulated miRNAs, two genes encoding proteins that are known to interact with PCV2-encoded proteins, zinc finger protein 265 (ZNF265) and regulator of G protein signaling 16 (RGS16), were selected for further analysis. We provide evidence that ZNF265 and RGS16 are direct targets of miR-139-5p and let-7e, respectively, which are both down-regulated by ORF2. Our data will initiate further studies to elucidate the roles of ORF-regulated cellular miRNAs in PCV2-host interactions.

Indexed as

Gene Expression RegulationAnimalsCell LineCircoviridae InfectionsCircovirusGene OntologyMicroRNAsOpen Reading FramesPorcine Postweaning Multisystemic Wasting SyndromeSwineViral ProteinsMicroRNAsViral Proteins

Identifiers

PMID25885539
PMCPMC4391141
OpenAlexW1977580124

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.