Evidence map›Paper›PMID 25884336›Full record

ArticleBMC cancer2015

Combined comparative genomic hybridization and transcriptomic analyses of ovarian granulosa cell tumors point to novel candidate driver genes.

Sandrine Caburet, Mikko Anttonen, Anne-Laure Todeschini, Leila Unkila-Kallio, Denis Mestivier, Ralf Butzow, Reiner A Veitia

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Loss ofInternational journal of molecular sciences · 2022
    Article
  3. Review
  4. Article
  5. Adult-type granulosa cell tumor of the ovary: a FOXL2-centric disease.The journal of pathology. Clinical research · 2021
    Article
  6. FOXO1 mitigates the SMAD3/FOXL2Journal of translational medicine · 2021
    Article
  7. Review
  8. Article
  9. Oncotarget · 2020
    Article
  10. Article
  11. FOXO1 Negates the Cooperative Action of FOXL2Journal of the Endocrine Society · 2019
    Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Sandrine CaburetInstitut Jacques Monod, Paris, France. caburet.sandrine@ijm.univ-paris-diderot.fr.
Mikko AnttonenDepartment of Obstetrics and Gynecology, University of Helsinki and Helsinki University Central Hospital, Helsinki, Finland. mikko.anttonen@helsinki.fi.
Anne-Laure TodeschiniInstitut Jacques Monod, Paris, France. todeschini@ijm.univ-paris-diderot.fr.
Leila Unkila-KallioDepartment of Obstetrics and Gynecology, University of Helsinki and Helsinki University Central Hospital, Helsinki, Finland. leila.unkila-kallio@hus.fi.
Denis MestivierInstitut Jacques Monod, Paris, France. denis.mestivier@gmail.com.
Ralf ButzowDepartment of Obstetrics and Gynecology, University of Helsinki and Helsinki University Central Hospital, Helsinki, Finland. Ralf.Butzow@hus.fi.
Reiner A VeitiaInstitut Jacques Monod, Paris, France. veitia.reiner@ijm.univ-paris-diderot.fr.
Institut Jacques Monod · FRHelsinki University Hospital · FIUniversité Paris Cité · FRUniversity of Helsinki · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOvarian granulosa cell tumors (GCTs) are the most frequent sex cord-stromal tumors. Several studies have shown that a somatic mutation leading to a C134W substitution in the transcription factor FOXL2 appears in more than 95% of adult-type GCTs. Its pervasive presence suggests that FOXL2 is the main cancer driver gene. However, other mutations and genomic changes might also contribute to tumor formation and/or progression.

methodsWe have performed a combined comparative genomic hybridization and transcriptomic analyses of 10 adult-type GCTs to obtain a picture of the genomic landscape of this cancer type and to identify new candidate co-driver genes.

resultsOur results, along with a review of previous molecular studies, show the existence of highly recurrent chromosomal imbalances (especially, trisomy 14 and monosomy 22) and preferential co-occurrences (i.e. trisomy 14/monosomy 22 and trisomy 7/monosomy 16q). In-depth analyses showed the presence of recurrently broken, amplified/duplicated or deleted genes. Many of these genes, such as AKT1, RUNX1 and LIMA1, are known to be involved in cancer and related processes. Further genomic explorations suggest that they are functionally related.

conclusionsOur combined analysis identifies potential candidate genes, whose alterations might contribute to adult-type GCT formation/progression together with the recurrent FOXL2 somatic mutation.

Indexed as

Gene Expression ProfilingComparative Genomic HybridizationCore Binding Factor Alpha 2 SubunitCytoskeletal ProteinsDNA Copy Number VariationsFemaleForkhead Box Protein L2Forkhead Transcription FactorsGene Expression Regulation, NeoplasticGenetic Association StudiesGenomicsGranulosa Cell TumorHumansNeoplasm ProteinsPoint MutationProto-Oncogene Proteins c-aktAKT1 protein, humanCore Binding Factor Alpha 2 SubunitCytoskeletal ProteinsForkhead Box Protein L2Forkhead Transcription FactorsFOXL2 protein, humanLIMA1 protein, humanNeoplasm ProteinsProto-Oncogene Proteins c-aktRUNX1 protein, human

Identifiers

PMID25884336
PMCPMC4407711
OpenAlexW2032245396

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.