Evidence map›Paper›PMID 25882556›Full record

ArticleMetallomics : integrated biometal science2015

The large intracellular loop of hZIP4 is an intrinsically disordered zinc binding domain.

Elizabeth M Bafaro, Sagar Antala, Tuong-Vi Nguyen, Stephen P Dzul, Brian Doyon, Timothy L Stemmler, Robert E Dempski

Abstract read
In one paragraph

Article in Metallomics : integrated biometal science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  6. Review
  7. The Molecular Basis for Zinc Bioavailability.International journal of molecular sciences · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Elizabeth M BafaroDepartment of Chemistry and Biochemistry, Worcester Polytechnic Institute, 100 Institute Road, Worcester, MA 01609, USA. rdempski@wpi.edu.
Sagar Antala
Tuong-Vi Nguyen
Stephen P Dzul
Brian Doyon
Timothy L Stemmler
Robert E Dempski
Worcester Polytechnic Institute · USWayne State University · US

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Structural Insights into the Function of FrataxinR01DK068139 · NIDDK · WAYNE STATE UNIVERSITY · PI STEMMLER, TIMOTHY LOUIS · 2005 to 2015
$3.5M
The molecular determinants of zinc uptake mediated by hZIP4R01GM105964 · NIGMS · WORCESTER POLYTECHNIC INSTITUTE · PI DEMPSKI, ROBERT EDWARD · 2014 to 2018
$1.4M
Characterizing Isu Scaffolding Protein and ISC Multiprotein Complex Structure andF30DK101230 · NIDDK · WAYNE STATE UNIVERSITY · PI DZUL, STEPHEN · 2014 to 2018
$166k
NIBIB NIH HHS P30 EB009998NIDDK NIH HHS DK068139NIDDK NIH HHS DK101230NIDDK NIH HHS F30 DK101230NIDDK NIH HHS R01 DK068139NIGMS NIH HHS R01 GM105964
6 · The paper itself

Abstract

The human (h) ZIP4 transporter is a plasma membrane protein which functions to increase the cytosolic concentration of zinc. hZIP4 transports zinc into intestinal cells and therefore has a central role in the absorption of dietary zinc. hZIP4 has eight transmembrane domains and encodes a large intracellular loop between transmembrane domains III and IV, M3M4. Previously, it has been postulated that this domain regulates hZIP4 levels in the plasma membrane in a zinc-dependent manner. The objective of this research was to examine the zinc binding properties of the large intracellular loop of hZIP4. Therefore, we have recombinantly expressed and purified M3M4 and showed that this domain binds two zinc ions. Using a combination of site-directed mutagenesis, metal binding affinity assays, and X-ray absorption spectroscopy, we demonstrated that the two Zn(2+) ions bind sequentially, with the first Zn(2+) binding to a CysHis3 site with a nanomolar binding affinity, and the second Zn(2+) binding to a His4 site with a weaker affinity. Circular dichroism spectroscopy revealed that the M3M4 domain is intrinsically disordered, with only a small structural change induced upon Zn(2+) coordination. Our data supports a model in which the intracellular M3M4 domain senses high cytosolic Zn(2+) concentrations and regulates the plasma membrane levels of the hZIP4 transporter in response to Zn(2+) binding.

Indexed as

Cation Transport ProteinsCysteineHistidineHumansIntrinsically Disordered ProteinsZincCation Transport ProteinsCysteineHistidineIntrinsically Disordered ProteinsSLC39A4 protein, humanZinc

Identifiers

PMID25882556
PMCPMC4558264
OpenAlexW1966728380

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.