Evidence map›Paper›PMID 25881176›Full record

ArticleBMC developmental biology2015

DNA methylation dynamics at imprinted genes during bovine pre-implantation embryo development.

Alan M O'Doherty, David A Magee, Lynee C O'Shea, Niamh Forde, Marijke E Beltman, Solomon Mamo, Trudee Fair

Open access · hybridAbstract read
In one paragraph

Article in BMC developmental biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
5.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Establishment of bovine expanded potential stem cells.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Methylome Dynamics of Bovine Gametes andFrontiers in genetics · 2019
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Epigenetics: A key paradigm in reproductive health.Clinical and experimental reproductive medicine · 2016
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Alan M O'DohertySchool of Agriculture and Food Science, University College Dublin, Belfield, Dublin, Ireland. alan.odoherty@ucd.ie.
David A MageeCollege of Agriculture, Health and Natural Resources, Animal Science, University of Connecticut, Connecticut, USA. david.magee@uconn.edu.
Lynee C O'SheaSchool of Agriculture and Food Science, University College Dublin, Belfield, Dublin, Ireland. lynne.oshea@ucd.ie.
Niamh FordeSchool of Agriculture and Food Science, University College Dublin, Belfield, Dublin, Ireland. niamh.forde@ucd.ie.
Marijke E BeltmanSchool of Agriculture and Food Science, University College Dublin, Belfield, Dublin, Ireland. marijke.beltman@ucd.ie.
Solomon MamoSchool of Agriculture and Food Science, University College Dublin, Belfield, Dublin, Ireland. solomon.mamo@ucd.ie.
Trudee FairSchool of Agriculture and Food Science, University College Dublin, Belfield, Dublin, Ireland. trudee.fair@ucd.ie.
University College Dublin · IEUniversity of Connecticut · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIn mammals, maternal differentially methylated regions (DMRs) acquire DNA methylation during the postnatal growth stage of oogenesis, with paternal DMRs acquiring DNA methylation in the perinatal prospermatagonia. Following fusion of the male and female gametes, it is widely accepted that murine DNA methylation marks at the DMRs of imprinted genes are stable through embryogenesis and early development, until they are reprogrammed in primordial germ cells. However, the DNA methylation dynamics at DMRs of bovine imprinted genes during early stages of development remains largely unknown. The objective of this investigation was to analyse the methylation dynamics at imprinted gene DMRs during bovine embryo development, from blastocyst stage until implantation.

resultsTo this end, pyrosequencing technology was used to quantify DNA methylation at DMR-associated CpG dinucleotides of six imprinted bovine genes (SNRPN, MEST, IGF2R, PLAGL1, PEG10 and H19) using bisulfite-modified genomic DNA isolated from individual blastocysts (Day 7); ovoid embryos (Day 14); filamentous embryos (Day 17) and implanting conceptuses (Day 25). For all genes, the degree of DNA methylation was most variable in Day 7 blastocysts compared to later developmental stages (P < 0.05). Furthermore, mining of RNA-seq transcriptomic data and western blot analysis revealed a specific window of expression of DNA methylation machinery genes (including DNMT3A, DNMT3B, TRIM28/KAP1 and DNMT1) and proteins (DNMT3A, DNMT3A2 and DNMT3B) by bovine embryos coincident with imprint stabilization.

conclusionThe findings of this study suggest that the DNA methylation status of bovine DMRs might be variable during the early stages of embryonic development, possibly requiring an active period of imprint stabilization.

Indexed as

BlastocystDNA MethylationGenomic ImprintingAnimalsCattleEmbryonic Development

Identifiers

PMID25881176
PMCPMC4363183
OpenAlexW2055679485

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.