Evidence map›Paper›PMID 25881093›Full record

ArticleBMC cancer2015

Tumor evolution and intratumor heterogeneity of an epithelial ovarian cancer investigated using next-generation sequencing.

Jung-Yun Lee, Jung-Ki Yoon, Boyun Kim, Soochi Kim, Min A Kim, Hyeonseob Lim, Duhee Bang, Yong-Sang Song

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in BMC cancer, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06084195 (Unravelling Tumour Biology In Ovarian Cancer With Precision Imaging), which is not on this map. Cited by 54 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06084195 narecruitingnot on this mapstarted 2023, after this paper: background citation

Unravelling Tumour Biology In Ovarian Cancer With Precision Imaging

TypeinterventionalSponsorInstitut du Cancer de Montpellier - Val d'AurelleRan2023 to 2029Enrolled120ConditionsHigh Grade Serous Ovarian CancerArmsBlood sample and tissue sample
3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 1 synthesis or guideline pooled it, 93 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Folate Receptor Alpha-A Secret Weapon in Ovarian Cancer Treatment?International journal of molecular sciences · 2024
    Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. KIF13A-A Key Regulator of Recycling Endosome Dynamics.Frontiers in cell and developmental biology · 2022
    Review
  14. Review
  15. Review
  16. Article
  17. Review
  18. Single-Cell RNA Sequencing of Ovarian Cancer: Promises and Challenges.Advances in experimental medicine and biology · 2021
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jung-Yun LeeDepartment of Obstetrics and Gynecology, Seoul National University, College of Medicine, 101 Daehak-ro, Jongno-gu, Seoul, 110-744, South Korea. yodrum682@gmail.com.
Jung-Ki YoonCollege of Medicine, Seoul National University, Seoul, 110-744, Republic of Korea. neododari@gmail.com.
Boyun KimCancer Research Institute, Seoul National University College of Medicine, Seoul, 110-799, Republic of Korea. romanticet@snu.ac.kr.
Soochi KimCancer Research Institute, Seoul National University College of Medicine, Seoul, 110-799, Republic of Korea. skim245@snu.ac.kr.
Min A KimDepartment of Pathology, Seoul National University College of Medicine, Seoul, 110-744, Republic of Korea. everest@snu.ac.kr.
Hyeonseob LimDepartment of Chemistry, Yonsei University, Room 437, Science Building, 50 Yonsei-ro, Seodaemun-gu, Seoul, 120-749, South Korea. limhs0915@gmail.com.
Duhee BangDepartment of Chemistry, Yonsei University, Room 437, Science Building, 50 Yonsei-ro, Seodaemun-gu, Seoul, 120-749, South Korea. duheebang@yonsei.ac.kr.
Yong-Sang SongDepartment of Obstetrics and Gynecology, Seoul National University, College of Medicine, 101 Daehak-ro, Jongno-gu, Seoul, 110-744, South Korea. yssong@snu.ac.kr.
Seoul National University · KRYonsei University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe extent to which metastatic tumors further evolve by accumulating additional mutations is unclear and has yet to be addressed extensively using next-generation sequencing of high-grade serous ovarian cancer.

methodsEleven spatially separated tumor samples from the primary tumor and associated metastatic sites and two normal samples were obtained from a Stage IIIC ovarian cancer patient during cytoreductive surgery prior to chemotherapy. Whole exome sequencing and copy number analysis were performed. Omental exomes were sequenced with a high depth of coverage to thoroughly explore the variants in metastatic lesions. Somatic mutations were further validated by ultra-deep targeted sequencing to sort out false positives and false negatives. Based on the somatic mutations and copy number variation profiles, a phylogenetic tree was generated to explore the evolutionary relationship among tumor samples.

resultsOnly 6% of the somatic mutations were present in every sample of a given case with TP53 as the only known mutant gene consistently present in all samples. Two non-spatial clusters of primary tumors (cluster P1 and P2), and a cluster of metastatic regions (cluster M) were identified. The patterns of mutations indicate that cluster P1 and P2 diverged in the early phase of tumorigenesis, and that metastatic cluster M originated from the common ancestral clone of cluster P1 with few somatic mutations and copy number variations.

conclusionsAlthough a high level of intratumor heterogeneity was evident in high-grade serous ovarian cancer, our results suggest that transcoelomic metastasis arises with little accumulation of somatic mutations and copy number alterations in this patient.

Indexed as

MutationAgedCarcinoma, Ovarian EpithelialDNA Copy Number VariationsExomeFemaleHigh-Throughput Nucleotide SequencingHumansINDEL MutationModels, BiologicalNeoplasm GradingNeoplasm MetastasisNeoplasms, Glandular and EpithelialNeoplasm StagingOvarian Neoplasms

Identifiers

PMID25881093
PMCPMC4346117
OpenAlexW2087499077

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.