Evidence map›Paper›PMID 25881070›Full record

ArticleBMC infectious diseases2015

Acinetobacter calcoaceticus from a fatal case of pneumonia harboring bla(NDM-1) on a widely distributed plasmid.

Peng Li, Chaojie Yang, Jing Xie, Nan Liu, Houzhao Wang, Ling Zhang, Xu Wang, Yong Wang, Shaofu Qiu, Hongbin Song

Abstract readCase Reports
In one paragraph

Article in BMC infectious diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Antibiotics (Basel, Switzerland) · 2023
    Article
  4. Genetic Resistance Determinants in ClinicalAntibiotics (Basel, Switzerland) · 2022
    Article
  5. Article
  6. Article
  7. Multidrug-resistantExperimental and therapeutic medicine · 2019
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Peng LiInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, 20 DongDa Street, Fengtai District, Beijing, 100071, China. jiekenlee@126.com.
Chaojie YangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, 20 DongDa Street, Fengtai District, Beijing, 100071, China. jettyang@163.com.
Jing XieInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, 20 DongDa Street, Fengtai District, Beijing, 100071, China. joycesuete122@gmail.com.
Nan LiuInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, 20 DongDa Street, Fengtai District, Beijing, 100071, China. anan160@126.com.
Houzhao Wang174th Hospital of PLA, Xiamen, Fujian, China. wanghouzhao@126.com.
Ling Zhang174th Hospital of PLA, Xiamen, Fujian, China. zhanglinghubei@163.com.
Xu WangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, 20 DongDa Street, Fengtai District, Beijing, 100071, China. wx1985_324@163.com.
Yong WangInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, 20 DongDa Street, Fengtai District, Beijing, 100071, China. ywang40@hotmail.com.
Shaofu QiuInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, 20 DongDa Street, Fengtai District, Beijing, 100071, China. qiushf0613@hotmail.com.
Hongbin SongInstitute of Disease Control and Prevention, Academy of Military Medical Sciences, 20 DongDa Street, Fengtai District, Beijing, 100071, China. hongbinsong@263.net.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWe have recovered one bla(NDM-1)-harboring bacterial strain, designated as XM1570, from a sputum sample obtained from a fatal case of pneumonia in China.

methodsBiochemical profiling, 16S rRNA sequencing and antimicrobial susceptibility testing were performed. Conjugation experiments were conducted to determine transmissibility of resistance. Pulsed-field gel electrophoresis and whole genome sequencing were performed to identify strain-specific features.

resultsThe isolate XM1570 was identified as Acinetobacter calcoaceticus. Whole genome sequencing identified two plasmids, pXM1 and pXM2. Comparative analysis showed >99% similarity between XM1570 and A. calcoaceticus PHEA-2. Plasmid pXM1 carried the carbapenemase gene bla(NDM-1) and displayed high homology with previously described plasmids isolated from different Acinetobacter spp., which were collected from human or livestock distributed in China and worldwide. The bla(NDM-1) gene was located on this conjugative plasmid in a transposon-like region flanked by two copies of the insertion sequence ISAba125; and resistance to all tested β-lactams was observed. Transferability of resistance from pXM1 to the transconjugants was identified. Plasmid pXM2 had an insertion sequence ISAba125 and a -35 region of the bla NDM-1 gene promoter but the bla NDM-1 gene was not present. A chromosomally located carbapenemase-encoding gene bla OXA-75 was detected; however, this gene was interrupted by an insertion sequence ISAba22 belonging to IS3 family.

conclusionsLocation of bla(NDM-1) on different self-transmissible plasmids could facilitate geographically broad dissemination and host range expansion of the bla(NDM-1) gene via horizontal gene transfer. Our findings of this normally environmental species A. calcoaceticus XM1570 further underline the significant clinical challenge and the essential need for surveillance including molecular methods and plasmid analyses.

Indexed as

AcinetobacterAcinetobacter calcoaceticusAcinetobacter InfectionsAnti-Bacterial Agentsbeta-LactamasesChinaDNA Transposable ElementsElectrophoresis, Gel, Pulsed-FieldFatal OutcomeGene Transfer, HorizontalHumansMicrobial Sensitivity TestsPlasmidsPneumonia, BacterialRNA, Ribosomal, 16SSequence Analysis, RNAAnti-Bacterial Agentsbeta-lactamase NDM-1beta-LactamasesDNA Transposable ElementsRNA, Ribosomal, 16S

Identifiers

PMID25881070
PMCPMC4373515

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.