Evidence map›Paper›PMID 25880553›Full record

ArticleMalaria journal2015

Drying anti-malarial drugs in vitro tests to outsource SYBR green assays.

Karim Traore, Adeline Lavoignat, Guillaume Bonnot, Fatimata Sow, Giuliana C Bess, Marjorie Chavant, Frederick Gay, Ogobara Doumbo, Stephane Picot

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 8 institutions in 2 countries.

Karim TraoreMalaria Research and Training Center, DEAP/FMPOS, UMI3189, Université des Sciences, des Techniques et des Technologies de Bamako, BP 1805, Bamako, Mali. karim@icermali.org.
Adeline LavoignatMalaria Research Unit, SMITH, ICBMS, UMR 5246 CNRS-INSA-CPE-University Claude Bernard Lyon1, 8 Avenue Rockefeller, 69373, Lyon, Cedex 08, France. adeline.lavoignat@univ-lyon1.fr.
Guillaume BonnotMalaria Research Unit, SMITH, ICBMS, UMR 5246 CNRS-INSA-CPE-University Claude Bernard Lyon1, 8 Avenue Rockefeller, 69373, Lyon, Cedex 08, France. guillaume.bonnot@univ-lyon1.fr.
Fatimata SowMalaria Research Unit, SMITH, ICBMS, UMR 5246 CNRS-INSA-CPE-University Claude Bernard Lyon1, 8 Avenue Rockefeller, 69373, Lyon, Cedex 08, France. fatimata.sow@etu.univ-lyon1.fr.
Giuliana C BessInstitut de Parasitologie et Mycologie Médicale, Hospices Civils de Lyon, Lyon, France. giuliana.constantino-bess@etu.univ-lyon1.fr.
Marjorie ChavantInstitut de Parasitologie et Mycologie Médicale, Hospices Civils de Lyon, Lyon, France. chavant.marjorie@gmail.com.
Frederick GayAP-HP, Service de Parasitologie-Mycologie, Université Pierre et Marie Curie Paris 6, Paris, France. frederick.gay@upmc.fr.
Ogobara DoumboMalaria Research and Training Center, DEAP/FMPOS, UMI3189, Université des Sciences, des Techniques et des Technologies de Bamako, BP 1805, Bamako, Mali. okd@icermali.org.
Stephane PicotMalaria Research Unit, SMITH, ICBMS, UMR 5246 CNRS-INSA-CPE-University Claude Bernard Lyon1, 8 Avenue Rockefeller, 69373, Lyon, Cedex 08, France. stephane.picot@univ-lyon1.fr.
Institut de Myologie · FRCentre National de la Recherche Scientifique · FRÉcole d'Ingénieurs en Chimie et Sciences du Numérique · FRHôpital Saint-Antoine · FRInstitut de Chimie et Biochimie Moléculaires et Supramoléculaires · FRInstitut National des Sciences Appliquées de Lyon · FRUniversité Claude Bernard Lyon 1 · FRUniversity of Bamako · ML

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMeasurement of anti-malarial drug efficacy and resistance relies mainly on in vivo clinical trials, in vitro/ex vivo assays and molecular markers detection. The existing in vitro/ex vivo assays, in particular those that are using non-radioactive devices, need to be standardized and adapted to field conditions. SYBR Green assay offers a rapid and cheap alternative to other in vitro assays, but it requires tools not commonly available in field laboratories. Here is described a modified SYBR green I protocol to perform the parasite growth test with blood samples in endemic areas, followed later by the SYBR green fluorescence assay performed at a specialized laboratory level.

methodsIn vitro susceptibility of Plasmodium falciparum clones HB3, 3D7, W2 and 7G8 to chloroquine (CQ), dihydroartemisinin (DHA), pyronaridine (PYD) and piperaquine (PPQ) was tested. Fresh isolates of P. falciparum from imported malaria cases were collected for ex vivo assays. The parasite suspension was added in 96-well plates predosed with anti-malarial drugs and incubated for 72 hours at 37°C, 5% CO2. SYBR green I protocol was modified to dry the plates after freeze-thawed process to mimic storage and shipping conditions. The plates were rehydrated with 200 μl of complete RPMI medium for fluorescence assay.

resultsThere were no significant differences in IC₅₀ values of CQ, DHA, PYD and PPQ, determined by the modified protocol, compared to standard protocol. Longer storage did not affect the IC₅₀ values.

conclusionThe SYBR green I modified protocol produced reliable results and could be a suitable method for in vitro/ex vivo assays in field.

Indexed as

AntimalarialsBenzothiazolesDiaminesDrug ResistanceFluorescent DyesInhibitory Concentration 50Organic ChemicalsParasitologyPlasmodium falciparumQuinolinesAntimalarialsBenzothiazolesDiaminesFluorescent DyesOrganic ChemicalsQuinolinesSYBR Green I

Identifiers

PMID25880553
PMCPMC4339011
OpenAlexW2160683330

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.