Evidence map›Paper›PMID 25880528›Full record

ArticleBMC microbiology2015

CrdR function in a curdlan-producing Agrobacterium sp. ATCC31749 strain.

Xiaoqin Yu, Chao Zhang, Liping Yang, Lamei Zhao, Chun Lin, Zhengjie Liu, Zichao Mao

Abstract read
In one paragraph

Article in BMC microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Genetic Engineering ofMicroorganisms · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xiaoqin YuCollege of Agriculture and Biotechnology, Yunnan Agricultural University, Kunming, China. 14787884558@163.com.
Chao ZhangCollege of Agriculture and Biotechnology, Yunnan Agricultural University, Kunming, China. zc876827281@sina.com.
Liping YangCollege of Agriculture and Biotechnology, Yunnan Agricultural University, Kunming, China. yangmumuxi@sina.cn.
Lamei ZhaoCollege of Agriculture and Biotechnology, Yunnan Agricultural University, Kunming, China. 908039065@qq.com.
Chun LinCollege of Agriculture and Biotechnology, Yunnan Agricultural University, Kunming, China. linchun0303@163.com.
Zhengjie LiuCollege of Agriculture and Biotechnology, Yunnan Agricultural University, Kunming, China. lzj1022@163.com.
Zichao MaoCollege of Agriculture and Biotechnology, Yunnan Agricultural University, Kunming, China. mao2010zichao@126.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAgrobacterium sp. ATCC31749 is an efficient curdlan producer at low pH and under nitrogen starvation. The helix-turn-helix transcriptional regulatory protein (crdR) essential for curdlan production has been analyzed, but whether crdR directly acts to cause expression of the curdlan biosynthesis operon (crdASC) is uncertain. To elucidate the molecular function of crdR in curdlan biosynthesis, we constructed a crdR knockout mutant along with pBQcrdR and pBQNcrdR vectors with crdR expression driven by a T5 promoter and crdR native promoter, respectively. Also, we constructed a pAG with the green fluorescent protein (GFP) gene driven by a curdlan biosynthetic operon promoter (crdP) to measure the effects of crdR expression on curdlan biosynthesis.

resultsCompared with wild-type (WT) strain biomass production, the biomass of the crdR knockout mutant was not significantly different in either exponential or stationary phases of growth. Mutant cells were non-capsulated and planktonic and produced significantly less curdlan. WT cells were curdlan-capsulated and aggregated in the stationery phase. pBQcrdR transformed to the WT strain had a 38% greater curdlan yield and pBQcrdR and pBQNcrdR transformed to the crdR mutant strain recovered 18% and 105% curdlan titers of the WT ATCC31749 strain, respectively. Consistent with its function of promoting curdlan biosynthesis, curdlan biosynthetic operon promoter (crdP) controlled GFP expression caused the transgenic strain to have higher GFP relative fluorescence in the WT strain, and no color change was observed with low GFP relative fluorescence in the crdR mutant strain as evidenced by fluorescent microscopy and spectrometric assay. q-RT-PCR revealed that crdR expression in the stationary phase was greater than in the exponential phase, and crdR overexpression in the WT strain increased crdA, crdS, and crdC expression. We also confirmed that purified crdR protein can specifically bind to the crd operon promoter region, and we inferred that crdR directly acts to cause expression of the curdlan biosynthesis operon (crdASC).

conclusionsCrdR is a positive transcriptional regulator of the crd operon for promoting curdlan biosynthesis in ATCC31749. The potential binding region of crdR is located within the -98 bp fragment upstream from the crdA start codon.

Indexed as

Gene Expression Regulation, BacterialPromoter Regions, GeneticAgrobacteriumBacterial Proteinsbeta-GlucansBinding SitesCodonGene Knockout TechniquesGenes, ReporterGenetic VectorsGreen Fluorescent ProteinsHydrogen-Ion ConcentrationNitrogenOperonProtein BindingTranscription, GeneticBacterial Proteinsbeta-GlucansCodoncurdlanGreen Fluorescent ProteinsNitrogen

Identifiers

PMID25880528
PMCPMC4327974

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.