Evidence map›Paper›PMID 25880457›Full record

ArticleBMC research notes2015

Characterisation and expression analysis of cathepsins and ubiquitin-proteasome genes in gilthead sea bream (Sparus aurata) skeletal muscle.

Cristina Salmerón, Isabel Navarro, Ian A Johnston, Joaquim Gutiérrez, Encarnación Capilla

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Article
  3. The Pattern of Gene Expression (Animals : an open access journal from MDPI · 2024
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Differential Metabolic and Transcriptional Responses of Gilthead Seabream (Animals : an open access journal from MDPI · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Cristina SalmerónDepartment of Physiology and Immunology, Faculty of Biology, University of Barcelona, Av. Diagonal 643, Barcelona, 08028, Spain. csalmeron@ub.edu.
Isabel NavarroDepartment of Physiology and Immunology, Faculty of Biology, University of Barcelona, Av. Diagonal 643, Barcelona, 08028, Spain. mnavarro@ub.edu.
Ian A JohnstonScottish Oceans Institute, School of Biology, University of St Andrews, St Andrews Fife, KY16 8LB, Scotland, UK. iaj@st-andrews.ac.uk.
Joaquim GutiérrezDepartment of Physiology and Immunology, Faculty of Biology, University of Barcelona, Av. Diagonal 643, Barcelona, 08028, Spain. jgutierrez@ub.edu.
Encarnación CapillaDepartment of Physiology and Immunology, Faculty of Biology, University of Barcelona, Av. Diagonal 643, Barcelona, 08028, Spain. ecapilla@ub.edu.
Universitat de Barcelona · ESUniversity of St Andrews · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe proteolytic enzymes involved in normal protein turnover in fish muscle are also responsible for post-mortem softening of the flesh and are therefore potential determinants of product quality. The main enzyme systems involved are calpains, cathepsins, and the ubiquitin-proteasome (UbP). In this study on Sparus aurata (Sa), the coding sequences of cathepsins (SaCTSB and SaCTSDb) and UbP family members (SaN3 and SaUb) were cloned from fast skeletal muscle, and their expression patterns were examined during ontogeny and in a fasting/re-feeding experiment.

resultsThe amino acid sequences identified shared 66-100% overall identity with their orthologues in other vertebrates, with well conserved characteristic functional domains and catalytic residues. SaCTSDb showed phylogenetic, sequence and tissue distribution differences with respect to its paralogue SaCTSDa, previously identified in the ovary. Expression of gilthead sea bream cathepsins (B, L, Da, Db) and UbP members (N3, Ub, MuRF1 and MAFbx) in fast skeletal muscle was determined at three different life-history stages and in response to fasting and re-feeding in juveniles. Most of the proteolytic genes analysed were significantly up-regulated during fasting, and down-regulated with re-feeding and, between the fingerling (15 g) and juvenile/adult stages (~50/500 g), consistent with a decrease in muscle proteolysis in both later contexts. In contrast, SaCTSDa and SaMuRF1 expression was relatively stable with ontogeny and SaUb had higher expression in fingerlings and adults than juveniles.

conclusionsThe data obtained in the present study suggest that cathepsins and UbP genes in gilthead sea bream are co-ordinately regulated during ontogeny to control muscle growth, and indicate that feeding regimes can modulate their expression, providing a potential dietary method of influencing post-mortem fillet tenderisation, and hence, product quality.

Indexed as

Age FactorsAmino Acid SequenceAnimalsCalpainCathepsinsCloning, MolecularConserved SequenceEscherichia coliFish ProductsFish ProteinsGene Expression Regulation, DevelopmentalMolecular Sequence DataMuscle, SkeletalPhylogenyProteasome Endopeptidase ComplexProtein IsoformsCalpainCathepsinsFish ProteinsProteasome Endopeptidase ComplexProtein IsoformsRecombinant ProteinsUbiquitin

Identifiers

PMID25880457
PMCPMC4431372
OpenAlexW2085793041

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.