Evidence map›Paper›PMID 25880323›Full record

Observational studyJAMA ophthalmology2015

Parallel Gene Expression Changes in Sarcoidosis Involving the Lacrimal Gland, Orbital Tissue, or Blood.

James T Rosenbaum, Dongseok Choi, David J Wilson, Hans E Grossniklaus, Christina A Harrington, Cailin H Sibley, Roger A Dailey, John D Ng, Eric A Steele, Craig N Czyz and 19 more

Registry-linked trialAbstract readComparative StudyMulticenter StudyObservational Study
In one paragraph

Observational study in JAMA ophthalmology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03793439 (Tofacitinib Hypothesis-generating, Pilot Study for Corticosteroid-Dependent Sarcoidosis), which is not on this map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03793439 phase1completednot on this mapstarted 2019, after this paper: background citation

Tofacitinib Hypothesis-generating, Pilot Study for Corticosteroid-Dependent Sarcoidosis

TypeinterventionalSponsorOregon Health and Science UniversityRan2019 to 2021Enrolled5ConditionsSarcoidosis, Pulmonary, Sarcoidosis Lung, SarcoidosisArmsTofacitinib 5mg Oral Tablet [Xeljanz] 16 week trial, Spirometry, RNA Sequencing, Laboratory testing, Corticosteroid
3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Progress in the diagnosis of ocular sarcoidosis.Indian journal of ophthalmology · 2022
    Review
  7. Article
  8. Article
  9. Review
  10. Rare Diseases of the Orbit.Laryngo- rhino- otologie · 2021
    Review
  11. Article
  12. Molecular profiling in sarcoidosis.Current opinion in pulmonary medicine · 2020
    Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Ocular sarcoidosis: new diagnostic modalities and treatment.Current opinion in pulmonary medicine · 2017
    Review
  18. Review
  19. Molecular diagnosis: Implications for ophthalmology.Progress in retinal and eye research · 2016
    Review
  20. Ocular Sarcoidosis.Clinics in chest medicine · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 13 institutions in 4 countries.

James T RosenbaumCasey Eye Institute, Oregon Health & Science University, Portland2Department of Medicine, School of Medicine, Oregon Health & Science University, Portland3Devers Eye Institute, Legacy Health Systems, Portland, Oregon.
Dongseok ChoiCasey Eye Institute, Oregon Health & Science University, Portland4Department of Public Health and Preventive Medicine, School of Medicine, Oregon Health & Science University, Portland.
David J WilsonCasey Eye Institute, Oregon Health & Science University, Portland.
Hans E GrossniklausDepartment of Ophthalmology, Emory School of Medicine, Emory University, Atlanta, Georgia.
Christina A HarringtonIntegrated Genomics Laboratory, Oregon Health & Science University, Portland.
Cailin H SibleyDepartment of Medicine, School of Medicine, Oregon Health & Science University, Portland.
Roger A DaileyCasey Eye Institute, Oregon Health & Science University, Portland.
John D NgCasey Eye Institute, Oregon Health & Science University, Portland.
Eric A SteeleCasey Eye Institute, Oregon Health & Science University, Portland.
Craig N CzyzDivision of Ophthalmology, Ohio University, Athens.
Jill A FosterDepartment of Ophthalmology, College of Medicine and Public Health, The Ohio State University, Columbus.
David TseDepartment of Ophthalmology, Miller School of Medicine, University of Miami, Miami, Florida.
Chris AlabiadDepartment of Ophthalmology, Miller School of Medicine, University of Miami, Miami, Florida.
Sander DubovyDepartment of Ophthalmology, Miller School of Medicine, University of Miami, Miami, Florida.
Prashant ParekhDepartment of Ophthalmology, Miller School of Medicine, University of Miami, Miami, Florida.
Gerald J HarrisDepartment of Ophthalmology, Medical College of Wisconsin, Milwaukee.
Michael KazimDepartment of Ophthalmology, College of Physicians and Surgeons, Columbia University, New York, New York.
Payal PatelDepartment of Ophthalmology, College of Physicians and Surgeons, Columbia University, New York, New York.
Valerie WhiteDepartment of Ophthalmology and Visual Sciences, Faculty of Medicine, University of British Columbia, Vancouver, British Columbia, Canada.
Peter DolmanDepartment of Ophthalmology and Visual Sciences, Faculty of Medicine, University of British Columbia, Vancouver, British Columbia, Canada.
Bobby S KornDepartment of Ophthalmology, School of Medicine, University of California, San Diego.
Don KikkawaDepartment of Ophthalmology, School of Medicine, University of California, San Diego.
Deepak P EdwardResearch Department, King Khaled Eye Specialist Hospital, Riyadh, Saudi Arabia.
Hind AlkatanResearch Department, King Khaled Eye Specialist Hospital, Riyadh, Saudi Arabia.
Hailah Al-HussainResearch Department, King Khaled Eye Specialist Hospital, Riyadh, Saudi Arabia.
R Patrick YeattsDepartment of Ophthalmology, School of Medicine, Wake Forrest University, Winston-Salem, North Carolina.
Dinesh SelvaOphthalmology Network, Royal Adelaide Hospital, Adelaide, Australia.
Patrick StaufferCasey Eye Institute, Oregon Health & Science University, Portland.
Stephen R PlanckCasey Eye Institute, Oregon Health & Science University, Portland2Department of Medicine, School of Medicine, Oregon Health & Science University, Portland3Devers Eye Institute, Legacy Health Systems, Portland, Oregon.
Oregon Health & Science University · USUniversity of Miami · USKing Khaled Eye Specialist Hospital · SAColumbia University · USUniversity of British Columbia · CAUniversity of California San Diego · USEmory University · USIgenbio (United States) · USMedical College of Wisconsin · USOhio University · USRoyal Adelaide Hospital · AUThe Ohio State University · USWake Forest University · US

Funding

OREGON CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024140 · NCRR · OREGON HEALTH & SCIENCE UNIVERSITY · PI ORWOLL, ERIC S. · 2006 to 2011
$61.1M
Proteomics CoreP30EY010572 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI TED S ACOTT · 1995 to 2026
$19.4M
Gene Expression in Nonspecific Orbital Inflammatory DiseaseR01EY020249 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI ROSENBAUM, JAMES T · 2011 to 2020
$5.0M
NCRR NIH HHS RR024140NCRR NIH HHS UL1 RR024140NEI NIH HHS EY010572NEI NIH HHS EY020249NEI NIH HHS P30 EY010572NEI NIH HHS R01 EY020249
6 · The paper itself

Abstract

importanceSarcoidosis is a major cause of ocular or periocular inflammation. The pathogenesis of sarcoidosis is incompletely understood and diagnosis often requires a biopsy.

objectiveTo determine how gene expression in either orbital adipose tissue or the lacrimal gland affected by sarcoidosis compares with gene expression in other causes of orbital disease and how gene expression in tissue affected by sarcoidosis compares with gene expression in peripheral blood samples obtained from patients with sarcoidosis. DESIGN, SETTING, AND

participantsIn a multicenter, international, observational study, gene expression profiling of formalin-fixed biopsy specimens, using GeneChipp U133 Plus 2 microarrays (Affymetrix), was conducted between October 2012 and January 2014 on tissues biopsied from January 2000 through June 2013. Participants included 12 patients with orbital sarcoidosis (7 in adipose tissue; 5 affecting the lacrimal gland) as well as comparable tissue from 6 healthy individuals serving as controls or patients with thyroid eye disease, nonspecific orbital inflammation, or granulomatosis with polyangiitis. In addition, results were compared with gene expression in peripheral blood samples obtained from 12 historical individuals with sarcoidosis. MAIN OUTCOMES AND MEASURES: Significantly differentially expressed transcripts defined as a minimum of a 1.5-fold increase or a comparable decrease and a false discovery rate of P < .05.

resultsSignals from 2449 probe sets (transcripts from approximately 1522 genes) were significantly increased in the orbital adipose tissue from patients with sarcoidosis. Signals from 4050 probe sets (approximately 2619 genes) were significantly decreased. Signals from 3069 probe sets (approximately 2001 genes) were significantly higher and 3320 (approximately 2283 genes) were significantly lower in the lacrimal gland for patients with sarcoidosis. Ninety-two probe sets (approximately 69 genes) had significantly elevated signals and 67 probe sets (approximately 56 genes) had significantly lower signals in both orbital tissues and in peripheral blood from patients with sarcoidosis. The transcription factors, interferon-response factor 1, interferon-response factor 2, and nuclear factor κB, were strongly implicated in the expression of messenger RNA upregulated in common in the 3 tissues. CONCLUSIONS AND RELEVANCE: Gene expression in sarcoidosis involving the orbit or lacrimal gland can be distinguished from gene expression patterns in control tissue and overlaps with many transcripts upregulated or downregulated in the peripheral blood of patients with sarcoidosis. These observations suggest that common pathogenic mechanisms contribute to sarcoidosis in different sites. The observations support the hypothesis that a pattern of gene expression profiles could provide diagnostic information in patients with sarcoidosis.

Indexed as

Adipose TissueAdultAgedBiopsy, NeedleCase-Control StudiesEye DiseasesFemaleGene Expression ProfilingGene Expression RegulationHumansInternationalityLacrimal ApparatusMaleMiddle AgedOrbitReference ValuesRNA, Messenger

Identifiers

PMID25880323
PMCPMC5021543
OpenAlexW1970716778

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.