Evidence map›Paper›PMID 25880069›Full record

ArticleBMC infectious diseases2015

Genetic diversity of the 2013-14 human isolates of influenza H7N9 in China.

Amber Farooqui, Alberto J Leon, Linxi Huang, Suwu Wu, Yingmu Cai, Pengzhou Lin, Weihong Chen, Xibin Fang, Tiansheng Zeng, Yisu Liu and 7 more

Abstract read
In one paragraph

Article in BMC infectious diseases, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Amber FarooquiDivision of Immunology, International Institute of Infection and Immunity, Shantou University Medical College, 22 Xinling Road, Shantou, Guangdong, 515041, China. amberfarooqui@hotmail.com.
Alberto J LeonDivision of Immunology, International Institute of Infection and Immunity, Shantou University Medical College, 22 Xinling Road, Shantou, Guangdong, 515041, China. aleon@uhnresearch.ca.
Linxi HuangIntensive Care Unit, the First Affiliated Hospital of Shantou University Medical College, Shantou, Guangdong, China. hlx1236@126.com.
Suwu WuIntensive Care Unit, Shantou Central Hospital, Shantou, Guangdong, China. 13502991856@163.com.
Yingmu CaiDepartment of Laboratory Medicine, The First Affiliated Hospital of Shantou University Medical College, Shantou, Guangdong, China. st_ymcai@126.com.
Pengzhou LinIntensive Care Unit, the First Affiliated Hospital of Shantou University Medical College, Shantou, Guangdong, China. Lpz1701@qq.com.
Weihong ChenIntensive Care Unit, Shantou Central Hospital, Shantou, Guangdong, China. chenweihong2006@163.com.
Xibin FangIntensive Care Unit, Shantou Central Hospital, Shantou, Guangdong, China. 1903003169@qq.com.
Tiansheng ZengDivision of Immunology, International Institute of Infection and Immunity, Shantou University Medical College, 22 Xinling Road, Shantou, Guangdong, 515041, China. 872703935@qq.com.
Yisu LiuDivision of Immunology, International Institute of Infection and Immunity, Shantou University Medical College, 22 Xinling Road, Shantou, Guangdong, 515041, China. 786414772@qq.com.
Li ZhangDivision of Immunology, International Institute of Infection and Immunity, Shantou University Medical College, 22 Xinling Road, Shantou, Guangdong, 515041, China. 741033233@qq.com.
Ting SuDivision of Immunology, International Institute of Infection and Immunity, Shantou University Medical College, 22 Xinling Road, Shantou, Guangdong, 515041, China. 545776041@qq.com.
Weibin ChenDivision of Immunology, International Institute of Infection and Immunity, Shantou University Medical College, 22 Xinling Road, Shantou, Guangdong, 515041, China. 342284415@qq.com.
Elodie GhedinDepartment of Biology, Center for Genomics and Systems Biology, Global Institute of Public Health, New York University, New York, USA. elodie.ghedin@nyu.edu.
Huachen ZhuJoint Influenza Research Centre (SUMC/HKU), Shantou University Medical College, Shantou, China. zhuhch@hku.hk.
Yi GuanJoint Influenza Research Centre (SUMC/HKU), Shantou University Medical College, Shantou, China. yguan@hku.hk.
David J KelvinDivision of Immunology, International Institute of Infection and Immunity, Shantou University Medical College, 22 Xinling Road, Shantou, Guangdong, 515041, China. dkelvin@jidc.org.

Funding

Omics-Based Predictive Modeling of Age-Dependent Outcome to Influenza InfectionU01AI111598 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GHEDIN, ELODIE · 2013 to 2017
$13.3M
NIAID NIH HHS 1U01AI11598-01NIAID NIH HHS U01 AI111598
6 · The paper itself

Abstract

backgroundInfluenza H7N9 has become an endemic pathogen in China where circulating virus is found extensively in wild birds and domestic poultry. Two epidemic waves of Human H7N9 infections have taken place in Eastern and South Central China during the years of 2013 and 2014. In this study, we report on the first four human cases of influenza H7N9 in Shantou, Guangdong province, which occurred during the second H7N9 wave, and the subsequent analysis of the viral isolates.

methodsViral genomes were subjected to multisegment amplification and sequenced in an Illumina MiSeq. Later, phylogenetic analyses of influenza H7N9 viruses were performed to establish the evolutionary context of the disease in humans.

resultsThe sequences of the isolates from Shantou have closer evolutionary proximity to the predominant Eastern H7N9 cluster (similar to A/Shanghai/1/2013 (H7N9)) than to the Southern H7N9 cluster (similar to A/Guangdong/1/2013 (H7N9)).

conclusionsTwo distinct phylogenetic groups of influenza H7N9 circulate currently in China and cause infections in humans as a consequence of cross-species spillover from the avian disease. The Eastern cluster, which includes the four isolates from Shantou, presents a wide geographic distribution and overlaps with the more restricted area of circulation of the Southern cluster. Continued monitoring of the avian disease is of critical importance to better understand and predict the epidemiological behaviour of the human cases.

Indexed as

ChinaGenetic VariationGenome, ViralHumansInfluenza A Virus, H7N9 SubtypeInfluenza, HumanPhylogenyRNA, ViralRNA, Viral

Identifiers

PMID25880069
PMCPMC4352237

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.