Evidence map›Paper›PMID 25879765›Full record

ArticleBMC biotechnology2015

Mutagenesis of Trichoderma reesei endoglucanase I: impact of expression host on activity and stability at elevated temperatures.

Harshal A Chokhawala, Christine M Roche, Tae-Wan Kim, Meera E Atreya, Neeraja Vegesna, Craig M Dana, Harvey W Blanch, Douglas S Clark

Open access · goldAbstract read
In one paragraph

Article in BMC biotechnology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Article
  3. Engineering cellulases for conversion of lignocellulosic biomass.Protein engineering, design & selection : PEDS · 2023
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  13. Article
  14. Expressing accessory proteins in cellulolyticBiotechnology for biofuels · 2017
    Article
  15. Article
  16. Conferring cellulose-degrading ability toBiotechnology for biofuels · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Harshal A ChokhawalaEnergy Biosciences Institute, University of California, Berkeley, CA, 94720, USA. harshal.ucd@gmail.com.
Christine M RocheEnergy Biosciences Institute, University of California, Berkeley, CA, 94720, USA. croche@berkeley.edu.
Tae-Wan KimEnergy Biosciences Institute, University of California, Berkeley, CA, 94720, USA. kimtw1216@gmail.com.
Meera E AtreyaEnergy Biosciences Institute, University of California, Berkeley, CA, 94720, USA. matreya@berkeley.edu.
Neeraja VegesnaDepartment of Biotechnology, Indian Institute of Technology, Kharagpur, West Bengal, 721301, India. neeraja149vegesna@gmail.com.
Craig M DanaEnergy Biosciences Institute, University of California, Berkeley, CA, 94720, USA. craigmdana@gmail.com.
Harvey W BlanchEnergy Biosciences Institute, University of California, Berkeley, CA, 94720, USA. blanch@berkeley.edu.
Douglas S ClarkEnergy Biosciences Institute, University of California, Berkeley, CA, 94720, USA. clark@berkeley.edu.
University of California, Berkeley · USEnergy Biosciences Institute · USIndian Institute of Technology Kharagpur · IN

Funding

Univ of Calif Berkeley Chemistry-Biology Interface ProgramT32GM066698 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI CHANG, CHRISTOPHER J., FRANCIS, MATTHEW B · 2004 to 2023
$7.5M
NIGMS NIH HHS T32 GM066698
6 · The paper itself

Abstract

backgroundTrichoderma reesei is a key cellulase source for economically saccharifying cellulosic biomass for the production of biofuels. Lignocellulose hydrolysis at temperatures above the optimum temperature of T. reesei cellulases (~50°C) could provide many significant advantages, including reduced viscosity at high-solids loadings, lower risk of microbial contamination during saccharification, greater compatibility with high-temperature biomass pretreatment, and faster rates of hydrolysis. These potential advantages motivate efforts to engineer T. reesei cellulases that can hydrolyze lignocellulose at temperatures ranging from 60-70°C.

resultsA B-factor guided approach for improving thermostability was used to engineer variants of endoglucanase I (Cel7B) from T. reesei (TrEGI) that are able to hydrolyze cellulosic substrates more rapidly than the recombinant wild-type TrEGI at temperatures ranging from 50-70°C. When expressed in T. reesei, TrEGI variant G230A/D113S/D115T (G230A/D113S/D115T Tr_TrEGI) had a higher apparent melting temperature (3°C increase in Tm) and improved half-life at 60°C (t1/2 = 161 hr) than the recombinant (T. reesei host) wild-type TrEGI (t1/2 = 74 hr at 60°C, Tr_TrEGI). Furthermore, G230A/D113S/D115T Tr_TrEGI showed 2-fold improved activity compared to Tr_TrEGI at 65°C on solid cellulosic substrates, and was as efficient in hydrolyzing cellulose at 60°C as Tr_TrEGI was at 50°C. The activities and stabilities of the recombinant TrEGI enzymes followed similar trends but differed significantly in magnitude depending on the expression host (Escherichia coli cell-free, Saccharomyces cerevisiae, Neurospora crassa, or T. reesei). Compared to N.crassa-expressed TrEGI, S. cerevisiae-expressed TrEGI showed inferior activity and stability, which was attributed to the lack of cyclization of the N-terminal glutamine in Sc_TrEGI and not to differences in glycosylation. N-terminal pyroglutamate formation in TrEGI expressed in S. cerevisiae was found to be essential in elevating its activity and stability to levels similar to the T. reesei or N. crassa-expressed enzyme, highlighting the importance of this ubiquitous modification in GH7 enzymes.

conclusionStructure-guided evolution of T. reesei EGI was used to engineer enzymes with increased thermal stability and activity on solid cellulosic substrates. Production of TrEGI enzymes in four hosts highlighted the impact of the expression host and the role of N-terminal pyroglutamate formation on the activity and stability of TrEGI enzymes.

Indexed as

MutagenesisCellulaseCelluloseEnzyme StabilityEscherichia coliFungal ProteinsHalf-LifeHot TemperatureModels, MolecularNeurospora crassaProtein ConformationPyrrolidonecarboxylic AcidRecombinant ProteinsSaccharomyces cerevisiaeSpecies SpecificityTrichodermaCellulaseCelluloseendoglucanase 1Fungal ProteinsPyrrolidonecarboxylic AcidRecombinant Proteins

Identifiers

PMID25879765
PMCPMC4347658
OpenAlexW2019430378

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.