Evidence map›Paper›PMID 25879701›Full record

ArticleBMC evolutionary biology2015

The evolutionary conservation of the A Disintegrin-like and Metalloproteinase domain with Thrombospondin-1 motif metzincins across vertebrate species and their expression in teleost zebrafish.

Frédéric G Brunet, Fiona W Fraser, Marley J Binder, Adam D Smith, Christopher Kintakas, Carolyn M Dancevic, Alister C Ward, Daniel R McCulloch

Open access · goldAbstract read
In one paragraph

Article in BMC evolutionary biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Dynamic and broad expression of adamts9 in developing and adult zebrafish.Developmental dynamics : an official publication of the American Association of Anatomists · 2023
    Article
  4. Article
  5. Review
  6. Review
  7. Adamts10 controls transforming growth factorFrontiers in molecular biosciences · 2022
    Article
  8. Metalloproteases in gonad formation and ovulation.General and comparative endocrinology · 2021
    Review
  9. Article
  10. Regulation of ADAMTS Proteases.Frontiers in molecular biosciences · 2021
    Review
  11. Review
  12. Review
  13. Article
  14. The ADAMTS5 Metzincin Regulates Zebrafish Somite Differentiation.International journal of molecular sciences · 2018
    Article
  15. Article
  16. Transcriptomic signatures for ovulation in vertebrates.General and comparative endocrinology · 2017
    Article
  17. Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Frédéric G BrunetInstitut de Génomique Fonctionnelle de Lyon, Université de Lyon, Université Lyon 1, CNRS, Ecole Normale Supérieure de Lyon, 46, allée d'Italie, 69364, Lyon cedex 07, France. frederic.brunet@ens-lyon.fr.
Fiona W FraserSchool of Medicine, Deakin University, Geelong, VIC, 3216, Australia. fiona.fraser@deakin.edu.au.
Marley J BinderSchool of Medicine, Deakin University, Geelong, VIC, 3216, Australia. mjbin@deakin.edu.au.
Adam D SmithSchool of Medicine, Deakin University, Geelong, VIC, 3216, Australia. damnitsham@hotmail.com.
Christopher KintakasSchool of Medicine, Deakin University, Geelong, VIC, 3216, Australia. cki@deakin.edu.au.
Carolyn M DancevicSchool of Medicine, Deakin University, Geelong, VIC, 3216, Australia. cmdan@deakin.edu.au.
Alister C WardSchool of Medicine, Deakin University, Geelong, VIC, 3216, Australia. alister.ward@deakin.edu.au.
Daniel R McCullochSchool of Medicine, Deakin University, Geelong, VIC, 3216, Australia. daniel.mcculloch@deakin.edu.au.
Deakin University · AUUniversité Claude Bernard Lyon 1 · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe A Disintegrin-like and Metalloproteinase domain with Thrombospondin-1 motifs (ADAMTS) enzymes comprise 19 mammalian zinc-dependent metalloproteinases (metzincins) with homologues in a wide range of invertebrates. ADAMTS enzymes have a broad range of functions in development and diseases due to their extracellular matrix remodelling activity. Here, we report a detailed characterisation of their evolutionary conservation across vertebrates.

resultsUsing bioinformatics complemented with de novo sequencing, gene sequences for ADAMTS enzymes were obtained from a variety of organisms. Detailed evolutionary analyses revealed a high level of conservation across vertebrates with evidence of ADAMTS gene expansion during two rounds of whole genome duplication (WGD) in vertebrates, while tandem duplication events and gene loss were also apparent. However, the additional round of teleost-specific WGD did not have a significant effect on ADAMTS gene family members suggesting their conserved roles have remained constant in teleost fish. Quantitative reverse-transcriptase polymerase chain reaction analysis revealed dynamic expression of adamts genes throughout zebrafish embryonic development reflecting the key conserved roles they play in vertebrate embryogenesis. Notably, several adamts mRNAs were maternally expressed with a dramatic increase in mRNA levels coinciding with zygotic expression and organogenesis. Broad adamts mRNA expression was also demonstrated in several adult organs indicating potential roles in adult homeostasis.

conclusionsOur data highlight the evolution of the ADAMTS gene family through duplication processes across metazoans supplemented by a burst of amplification through vertebrate WGD events. It also strongly posits the zebrafish as a potential model species to further elucidate the function of ADAMTS enzymes during vertebrate development.

Indexed as

Evolution, MolecularADAM ProteinsAnimalsGene DuplicationGene Expression Regulation, DevelopmentalGenomeMetalloendopeptidasesPhylogenyProtein Structure, TertiaryVertebratesZebrafishZebrafish ProteinsADAM ProteinsMetalloendopeptidasesZebrafish Proteins

Identifiers

PMID25879701
PMCPMC4349717
OpenAlexW1985474861

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.