Evidence map›Paper›PMID 25878345›Full record

ArticleJournal of clinical microbiology2015

Implementation of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry in Routine Clinical Laboratories Improves Identification of Coagulase-Negative Staphylococci and Reveals the Pathogenic Role of Staphylococcus lugdunensis.

Xavier Argemi, Philippe Riegel, Thierry Lavigne, Nicolas Lefebvre, Nicolas Grandpré, Yves Hansmann, Benoit Jaulhac, Gilles Prévost, Frédéric Schramm

Abstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Article
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  3. Comparison ofInternational journal of molecular sciences · 2025
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  8. Importance ofThe Journal of international medical research · 2022
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  9. Knowledge, Attitude and Practice RegardingInfectious disease reports · 2022
    Review
  10. Article
  11. Children (Basel, Switzerland) · 2022
    Article
  12. Review
  13. Article
  14. Case reports in infectious diseases · 2021
    Article
  15. Article
  16. Review
  17. Coagulase-negative staphylococci in outpatient routines: the implications of switching from CLSI to BrCAST/EUCAST guidelines.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2020
    Article
  18. Review
  19. Article
  20. Coagulase-Negative Staphylococci Pathogenomics.International journal of molecular sciences · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Xavier ArgemiUniversité de Strasbourg, Hôpitaux Universitaires de Strasbourg, Fédération de Médecine Translationnelle de Strasbourg, EA7290 Virulence Bactérienne Précoce, Strasbourg, France xavier_argemi@hotmail.com.
Philippe RiegelLaboratoire de Microbiologie, Hôpitaux Universitaires, Strasbourg, France.
Thierry LavigneUniversité de Strasbourg, Hôpitaux Universitaires de Strasbourg, Fédération de Médecine Translationnelle de Strasbourg, EA7290 Virulence Bactérienne Précoce, Strasbourg, France.
Nicolas LefebvreService des Maladies Infectieuses et Tropicales, Hôpitaux Universitaires, Strasbourg, France.
Nicolas GrandpréLaboratoire de Microbiologie, Hôpitaux Universitaires, Strasbourg, France.
Yves HansmannService des Maladies Infectieuses et Tropicales, Hôpitaux Universitaires, Strasbourg, France.
Benoit JaulhacLaboratoire de Microbiologie, Hôpitaux Universitaires, Strasbourg, France.
Gilles PrévostUniversité de Strasbourg, Hôpitaux Universitaires de Strasbourg, Fédération de Médecine Translationnelle de Strasbourg, EA7290 Virulence Bactérienne Précoce, Strasbourg, France.
Frédéric SchrammLaboratoire de Microbiologie, Hôpitaux Universitaires, Strasbourg, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The use of matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) for staphylococcal identification is now considered routine in laboratories compared with the conventional phenotypical methods previously used. We verified its microbiological relevance for identifying the main species of coagulase-negative staphylococci (CoNS) by randomly selecting 50 isolates. From 1 January 2007 to 31 August 2008, 12,479 staphylococci were isolated with phenotypic methods, of which 4,594 were identified as Staphylococcus aureus and 7,885 were coagulase negative staphylococci. Using MALDI-TOF MS from 1 January 2011 to 31 August 2012, 14,913 staphylococci were identified, with 5,066 as S. aureus and 9,847 as CoNS. MALDI-TOF MS allowed the identification of approximately 85% of the CoNS strains, whereas only 14% of the CoNS strains were identified to the species level with phenotypic methods because they were often considered contaminants. Furthermore, the use of MALDI-TOF MS revealed the occurrence of recently characterized Staphylococcus species, such as S. pettenkoferi, S. condimenti, and S. piscifermentans. Microbiological relevance analysis further revealed that some species displayed a high rate of microbiological significance, i.e., 40% of the S. lugdunensis strains included in the analysis were associated with infection risk. This retrospective microbiological study confirms the role of MALDI-TOF MS in clinical settings for the identification of staphylococci with clinical consequences. The species distribution reveals the occurrence of the recently identified species S. pettenkoferi and putative virulent species, including S. lugdunensis.

Indexed as

AdolescentBacteriological TechniquesChildChild, PreschoolCoagulaseFemaleHumansInfantInfant, NewbornMaleRetrospective StudiesSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationStaphylococcal InfectionsStaphylococcusCoagulase

Identifiers

PMID25878345
PMCPMC4473201

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.