Evidence map›Paper›PMID 25878344›Full record

ArticleJournal of clinical microbiology2015

Development and Validation of a Laboratory-Developed Multiplex Real-Time PCR Assay on the BD Max System for Detection of Herpes Simplex Virus and Varicella-Zoster Virus DNA in Various Clinical Specimens.

Sylvie Pillet, Paul O Verhoeven, Amélie Epercieux, Thomas Bourlet, Bruno Pozzetto

Open access · bronzeAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. The Prevalence of HSV, HHV-6, HPV andPathogens (Basel, Switzerland) · 2019
    Article
  6. Article
  7. Article
  8. Evaluation of RealStar®BioMed research international · 2019
    Article
  9. Article
  10. Article
  11. Article
  12. [Herpes zoster and postherpetic neuralgia].Der Hautarzt; Zeitschrift fur Dermatologie, Venerologie, und verwandte Gebiete · 2016
    Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sylvie PilletLaboratory of Infectious Agents and Hygiene and GIMAP-EA3064, University Hospital of Saint-Etienne, Saint-Etienne, France.
Paul O VerhoevenLaboratory of Infectious Agents and Hygiene and GIMAP-EA3064, University Hospital of Saint-Etienne, Saint-Etienne, France.
Amélie EpercieuxLaboratory of Infectious Agents and Hygiene and GIMAP-EA3064, University Hospital of Saint-Etienne, Saint-Etienne, France.
Thomas BourletLaboratory of Infectious Agents and Hygiene and GIMAP-EA3064, University Hospital of Saint-Etienne, Saint-Etienne, France.
Bruno PozzettoLaboratory of Infectious Agents and Hygiene and GIMAP-EA3064, University Hospital of Saint-Etienne, Saint-Etienne, France bruno.pozzetto@univ-st-etienne.fr.
Centre Hospitalier Universitaire de Saint-Étienne · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A multiplex real-time PCR (quantitative PCR [qPCR]) assay detecting herpes simplex virus (HSV) and varicella-zoster virus (VZV) DNA together with an internal control was developed on the BD Max platform combining automated DNA extraction and an open amplification procedure. Its performance was compared to those of PCR assays routinely used in the laboratory, namely, a laboratory-developed test for HSV DNA on the LightCycler instrument and a test using a commercial master mix for VZV DNA on the ABI7500fast system. Using a pool of negative cerebrospinal fluid (CSF) samples spiked with either calibrated controls for HSV-1 and VZV or dilutions of a clinical strain that was previously quantified for HSV-2, the empirical limit of detection of the BD Max assay was 195.65, 91.80, and 414.07 copies/ml for HSV-1, HSV-2, and VZV, respectively. All the samples from HSV and VZV DNA quality control panels (Quality Control for Molecular Diagnostics [QCMD], 2013, Glasgow, United Kingdom) were correctly identified by the BD Max assay. From 180 clinical specimens of various origins, 2 CSF samples were found invalid by the BD Max assay due to the absence of detection of the internal control; a concordance of 100% was observed between the BD Max assay and the corresponding routine tests. The BD Max assay detected the PCR signal 3 to 4 cycles earlier than did the routine methods. With results available within 2 h on a wide range of specimens, this sensitive and fully automated PCR assay exhibited the qualities required for detecting simultaneously HSV and VZV DNA on a routine basis.

Indexed as

DNA, ViralHerpesviridae InfectionsHerpesvirus 3, HumanHumansLimit of DetectionMolecular TypingMultiplex Polymerase Chain ReactionReal-Time Polymerase Chain ReactionReproducibility of ResultsRetrospective StudiesSimplexvirusDNA, Viral

Identifiers

PMID25878344
PMCPMC4432052
OpenAlexW2094859188

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.