Evidence map›Paper›PMID 25878099›Full record

ArticleJournal of virology2015

Faustovirus, an asfarvirus-related new lineage of giant viruses infecting amoebae.

Dorine Gaëlle Reteno, Samia Benamar, Jacques Bou Khalil, Julien Andreani, Nicholas Armstrong, Thomas Klose, Michael Rossmann, Philippe Colson, Didier Raoult, Bernard La Scola

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 131 papers.

0numbers the graph read from it
0cells of the map it votes in
131citing papers in PubMed
27.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

131 citing papers in PubMed, 189 citations in OpenAlex.

  1. Article
  2. Review
  3. Engineering a Virus-Derived X Family DNA Polymerase FvPolX for de novo DNA Synthesis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  8. Article
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  10. Article
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  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Re-evaluating evidence for giant genomes in amoebae.Genetics and molecular biology · 2024
    Article
  18. Article
  19. Surface fibrils on the particles of nucleocytoviruses: A review.Experimental biology and medicine (Maywood, N.J.) · 2023
    Review
  20. Article

71 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 2 countries.

Dorine Gaëlle Reteno
Samia Benamar
Jacques Bou Khalil
Julien Andreani
Nicholas Armstrong
Thomas Klose
Michael Rossmann
Philippe Colson
Didier Raoult
Bernard La Scola
Centre National de la Recherche Scientifique · FRInstitut de Recherche pour le Développement · FRPurdue University West Lafayette · USAix-Marseille Université · FRAssistance Publique Hôpitaux de Marseille · FRInserm · FRMéditerranée Infection Foundation · FR

Funding

STRUCTURE OF A SMALL SPHERICAL VIRUSR37AI011219 · NIAID · PURDUE UNIVERSITY WEST LAFAYETTE · PI ROSSMANN, MICHAEL G · 1986 to 2015
$6.6M
STRUCTURE OF A SMALL SPHERICAL VIRUSR01AI011219 · NIAID · PURDUE UNIVERSITY WEST LAFAYETTE · PI KUHN, RICHARD J. · 1985 to 2020
$2.4M
NIAID NIH HHS AI011219NIAID NIH HHS R01 AI011219NIAID NIH HHS R37 AI011219
6 · The paper itself

Abstract

unlabelledGiant viruses are protist-associated viruses belonging to the proposed order Megavirales; almost all have been isolated from Acanthamoeba spp. Their isolation in humans suggests that they are part of the human virome. Using a high-throughput strategy to isolate new giant viruses from their original protozoan hosts, we obtained eight isolates of a new giant viral lineage from Vermamoeba vermiformis, the most common free-living protist found in human environments. This new lineage was proposed to be the faustovirus lineage. The prototype member, faustovirus E12, forms icosahedral virions of ≈ 200 nm that are devoid of fibrils and that encapsidate a 466-kbp genome encoding 451 predicted proteins. Of these, 164 are found in the virion. Phylogenetic analysis of the core viral genes showed that faustovirus is distantly related to the mammalian pathogen African swine fever virus, but it encodes ≈ 3 times more mosaic gene complements. About two-thirds of these genes do not show significant similarity to genes encoding any known proteins. These findings show that expanding the panel of protists to discover new giant viruses is a fruitful strategy. IMPORTANCE: By using Vermamoeba, a protist living in humans and their environment, we isolated eight strains of a new giant virus that we named faustovirus. The genomes of these strains were sequenced, and their sequences showed that faustoviruses are related to but different from the vertebrate pathogen African swine fever virus (ASFV), which belongs to the family Asfarviridae. Moreover, the faustovirus gene repertoire is ≈ 3 times larger than that of ASFV and comprises approximately two-thirds ORFans (open reading frames [ORFs] with no detectable homology to other ORFs in a database).

Indexed as

AsfarviridaeCluster AnalysisDNA, ViralGenome, ViralLoboseaMicroscopy, Electron, TransmissionMolecular Sequence DataOpen Reading FramesPhylogenyProteomeSequence Analysis, DNASequence HomologyViral ProteinsVirionDNA, ViralProteomeViral Proteins

Identifiers

PMID25878099
PMCPMC4468488
OpenAlexW1981435058

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.