Evidence map›Paper›PMID 25877903›Full record

ArticleEnvironmental science and pollution research international2015

Rice husks and their hydrochars cause unexpected stress response in the nematode Caenorhabditis elegans: reduced transcription of stress-related genes.

Shumon Chakrabarti, Christiane Dicke, Dimitrios Kalderis, Jürgen Kern

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Article in Environmental science and pollution research international, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.1field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Shumon ChakrabartiATB, Leibniz Institute for Agricultural Engineering Potsdam-Bornim, Max-Eyth-Allee 100, 14469, Potsdam, Germany.
Christiane Dicke
Dimitrios Kalderis
Jürgen Kern
Leibniz Association · DEHellenic Mediterranean University · GR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Currently, char substrates gain a lot of interest since soils amended with such substrates are being discussed to increase in fertility and productivity, water retention, and mitigation of greenhouse gases. Char substrates can be produced by carbonization of organic matter. Among different process conditions, temperature is the main factor controlling the occurrence of organic and inorganic contaminants such as phenols and furfurals, which may affect target and non-target organisms. The hydrochar produced at 200 °C contained both furfural and phenol with concentrations of 282 and 324 mg kg(-1) in contrast to the 300 °C hydrochar, which contained only phenol with a concentration of 666 mg kg(-1). By washing with acetone and water, these concentrations were significantly reduced. In this study, the potential toxic effects of hydrochars on the free-living nematode Caenorhabditis elegans were investigated via gene transcription studies using the following four matrices: (i) raw rice husk, (ii) unwashed rice char, (iii) acetone/water washed rice char, and (iv) the wash water of the two rice chars produced at 200 and 300 °C via hydrothermal carbonization (HTC). Furthermore, genetically modified strains, where the green fluorescent protein (GFP) gene sequence is linked to a reporter gene central in specific anti-stress regulations, were also exposed to these matrices. Transgenic worms exposed to hydrochars showed very weak, if any, fluorescence, and expression of the associated RNAs related to stress response and biotransformation genes was surprisingly downregulated. Similar patterns were also found for the raw rice husk. It is hypothesized that an unidentified chemical trigger exists in the rice husk, which is not destroyed during the HTC process. Therefore, the use of GFP transgenic nematode strains cannot be recommended as a general rapid monitoring tool for farmers treating their fields with artificial char. However, it is hypothesized that the observed reduced transcriptional response with the subsequent lack of energy-consuming stress response is an energy-saving mechanism in the exposed nematodes. If this holds true in future studies, this finding opens the window to an innovative new field of stress ecology.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCharcoalGenes, ReporterGreen Fluorescent ProteinsOryzaSeedsSoilSoil PollutantsWaste ProductsCaenorhabditis elegans ProteinsCharcoalGreen Fluorescent ProteinsSoilSoil PollutantsWaste Products

Identifiers

PMID25877903
OpenAlexW2036963468

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.