Evidence map›Paper›PMID 25875846›Full record

ArticlePLoS genetics2015

A missense change in the ATG4D gene links aberrant autophagy to a neurodegenerative vacuolar storage disease.

Kaisa Kyöstilä, Pernilla Syrjä, Vidhya Jagannathan, Gayathri Chandrasekar, Tarja S Jokinen, Eija H Seppälä, Doreen Becker, Michaela Drögemüller, Elisabeth Dietschi, Cord Drögemüller and 13 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it, 54 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Genes · 2025
    Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Cavin-1 promotes M2 macrophages/microglia polarization via SOCS3.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Autophagy in Drosophila and Zebrafish.Advances in experimental medicine and biology · 2021
    Article
  17. Article
  18. Autophagy and disease: unanswered questions.Cell death and differentiation · 2020
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 9 institutions in 6 countries.

Kaisa KyöstiläDepartment of Veterinary Biosciences, University of Helsinki, Helsinki, Finland; Research Programs Unit, Molecular Neurology, University of Helsinki, Helsinki, Finland; Department of Molecular Genetics, Folkhälsan Institute of Genetics, Helsinki, Finland.
Pernilla SyrjäDepartment of Veterinary Biosciences, University of Helsinki, Helsinki, Finland.
Vidhya JagannathanInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Gayathri ChandrasekarDepartment of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden.
Tarja S JokinenDepartment of Equine and Small Animal Medicine, University of Helsinki, Helsinki, Finland.
Eija H SeppäläDepartment of Veterinary Biosciences, University of Helsinki, Helsinki, Finland; Research Programs Unit, Molecular Neurology, University of Helsinki, Helsinki, Finland; Department of Molecular Genetics, Folkhälsan Institute of Genetics, Helsinki, Finland.
Doreen BeckerInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Michaela DrögemüllerInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Elisabeth DietschiInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Cord DrögemüllerInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Johann LangDepartment of Clinical Veterinary Medicine, Division of Clinical Radiology, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Frank SteffenNeurology Service, Department of Small Animals, Vetsuisse Faculty, University of Zurich, Zurich, Switzerland.
Cecilia RohdinUniversity Animal Hospital, Swedish University of Agricultural Sciences, Uppsala, Sweden.
Karin H JäderlundDepartment of Companion Animal Clinical Sciences, Norwegian University of Life Sciences, Oslo, Norway.
Anu K LappalainenDepartment of Equine and Small Animal Medicine, University of Helsinki, Helsinki, Finland.
Kerstin HahnDepartment of Pathology, University of Veterinary Medicine Hannover, Hannover, Germany.
Peter WohlseinDepartment of Pathology, University of Veterinary Medicine Hannover, Hannover, Germany.
Wolfgang BaumgärtnerDepartment of Pathology, University of Veterinary Medicine Hannover, Hannover, Germany.
Diana HenkeDivision of Neurological Sciences, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Anna OevermannDivision of Neurological Sciences, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
Juha KereResearch Programs Unit, Molecular Neurology, University of Helsinki, Helsinki, Finland; Department of Molecular Genetics, Folkhälsan Institute of Genetics, Helsinki, Finland; Department of Biosciences and Nutrition, Karolinska Institutet, Huddinge, Sweden; Science for Life Laboratory, Karolinska Institutet, Solna, Sweden.
Hannes LohiDepartment of Veterinary Biosciences, University of Helsinki, Helsinki, Finland; Research Programs Unit, Molecular Neurology, University of Helsinki, Helsinki, Finland; Department of Molecular Genetics, Folkhälsan Institute of Genetics, Helsinki, Finland.
Tosso LeebInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland.
University of Bern · CHUniversity of Helsinki · FIUniversity of Veterinary Medicine Hannover, Foundation · DEInstitute of Genetics · HUFolkhälsans Forskningscentrum · FIKarolinska Institutet · SENorwegian University of Life Sciences · NOSwedish University of Agricultural Sciences · SEUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Inherited neurodegenerative disorders are debilitating diseases that occur across different species. We have performed clinical, pathological and genetic studies to characterize a novel canine neurodegenerative disease present in the Lagotto Romagnolo dog breed. Affected dogs suffer from progressive cerebellar ataxia, sometimes accompanied by episodic nystagmus and behavioral changes. Histological examination revealed unique pathological changes, including profound neuronal cytoplasmic vacuolization in the nervous system, as well as spheroid formation and cytoplasmic aggregation of vacuoles in secretory epithelial tissues and mesenchymal cells. Genetic analyses uncovered a missense change, c.1288G>A; p.A430T, in the autophagy-related ATG4D gene on canine chromosome 20 with a highly significant disease association (p = 3.8 x 10-136) in a cohort of more than 2300 Lagotto Romagnolo dogs. ATG4D encodes a poorly characterized cysteine protease belonging to the macroautophagy pathway. Accordingly, our histological analyses indicated altered autophagic flux in affected tissues. The knockdown of the zebrafish homologue atg4da resulted in a widespread developmental disturbance and neurodegeneration in the central nervous system. Our study describes a previously unknown canine neurological disease with particular pathological features and implicates the ATG4D protein as an important autophagy mediator in neuronal homeostasis. The canine phenotype serves as a model to delineate the disease-causing pathological mechanism(s) and ATG4D function, and can also be used to explore treatment options. Furthermore, our results reveal a novel candidate gene for human neurodegeneration and enable the development of a genetic test for veterinary diagnostic and breeding purposes.

Indexed as

Mutation, MissenseAmino Acid SequenceAnimalsAutophagyBase SequenceBrainCysteine EndopeptidasesDogsMolecular Sequence DataNeurodegenerative DiseasesVacuolesZebrafishCysteine Endopeptidases

Identifiers

PMID25875846
PMCPMC4398399
OpenAlexW2014321318

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.