Evidence map›Paper›PMID 25875760›Full record

ArticlePloS one2015

Relevance of vitamin D receptor target genes for monitoring the vitamin D responsiveness of primary human cells.

Maja Vukić, Antonio Neme, Sabine Seuter, Noora Saksa, Vanessa D F de Mello, Tarja Nurmi, Matti Uusitupa, Tomi-Pekka Tuomainen, Jyrki K Virtanen, Carsten Carlberg

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03665116 (Effects of Arginine on Osteoarthritis), which is not on this map. Cited by 45 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed, 2 pooled it
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03665116 naunknown statusnot on this mapstarted 2019, after this paper: background citation

Effects of Arginine on Osteoarthritis: A Pilot Clinical Trial

TypeinterventionalSponsorMemorial University of NewfoundlandRan2019 to 2024Enrolled38ConditionsKnee OsteoarthritisArmsL-arginine
3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 2 syntheses or guidelines pooled it, 85 citations in OpenAlex.

  1. Effect of epigenetics on vitamin D levels: a systematic review until December 2020.Archives of public health = Archives belges de sante publique · 2023
    Pooled it
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  12. mSphere · 2025
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  13. Frontiers in nutrition · 2025
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  14. EarlyFrontiers in immunology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Maja VukićSchool of Medicine, Institute of Biomedicine, University of Eastern Finland, Kuopio, Finland.
Antonio NemeSchool of Medicine, Institute of Biomedicine, University of Eastern Finland, Kuopio, Finland.
Sabine SeuterSchool of Medicine, Institute of Biomedicine, University of Eastern Finland, Kuopio, Finland.
Noora SaksaSchool of Medicine, Institute of Biomedicine, University of Eastern Finland, Kuopio, Finland.
Vanessa D F de MelloInstitute of Public Health and Clinical Nutrition, University of Eastern Finland, Kuopio, Finland.
Tarja NurmiInstitute of Public Health and Clinical Nutrition, University of Eastern Finland, Kuopio, Finland.
Matti UusitupaInstitute of Public Health and Clinical Nutrition, University of Eastern Finland, Kuopio, Finland.
Tomi-Pekka TuomainenInstitute of Public Health and Clinical Nutrition, University of Eastern Finland, Kuopio, Finland.
Jyrki K VirtanenInstitute of Public Health and Clinical Nutrition, University of Eastern Finland, Kuopio, Finland.
Carsten CarlbergSchool of Medicine, Institute of Biomedicine, University of Eastern Finland, Kuopio, Finland.
University of Eastern Finland · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vitamin D3 has transcriptome- and genome-wide effects and activates, via the binding of its metabolite 1α,25-dihydroxyvitamin D3 to the transcription factor vitamin D receptor (VDR), several hundred target genes. Using samples from a 5-month vitamin D3 intervention study (VitDmet), we recently reported that the expression of 12 VDR target genes in peripheral blood mononuclear cells (PBMCs) as well as 12 biochemical and clinical parameters of the study participants are significantly triggered by vitamin D3. In this study, we performed a more focused selection of further 12 VDR target genes and demonstrated that changes of their mRNA expression in PBMCs of VitDmet subjects significantly correlate with alterations of 25-hydroxyvitamin D3 serum levels. Network and self-organizing map analysis of these datasets together with that of the other 24 parameters was followed by relevance calculations and identified changes in parathyroid hormone serum levels and the expression of the newly selected genes STS, BCL6, ITGAM, LRRC25, LPGAT1 and TREM1 as well as of the previously reported genes DUSP10 and CD14 as the most relevant parameters for describing vitamin D responsiveness in vivo. Moreover, parameter relevance ranking allowed the segregation of study subjects into high and low responders. Due to the long intervention period the vitamin D response was not too prominent on the level of transcriptional activation. Therefore, we performed in the separate VitDbol trial a short-term but high dose stimulation with a vitamin D3 bolus. In PBMCs of VitDbol subjects we observed direct transcriptional effects on the selected VDR target genes, such as an up to 2.1-fold increase already one day after supplementation onset. In conclusion, both long-term and short-term vitamin D3 supplementation studies allow monitoring the vitamin D responsiveness of human individuals and represent new types of human in vivo vitamin D3 investigations.

Indexed as

BiomarkersChromatin ImmunoprecipitationDietary SupplementsFemaleGene Expression RegulationGene Regulatory NetworksHumansLeukocytes, MononuclearMaleMiddle AgedMultigene FamilyReal-Time Polymerase Chain ReactionReceptors, CalcitriolSignal TransductionVitamin DVitamin D DeficiencyBiomarkersdihydroxy-vitamin D3Receptors, CalcitriolVDR protein, humanVitamin DVitamins

Identifiers

PMID25875760
PMCPMC4395145
OpenAlexW2330020390

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.