Evidence map›Paper›PMID 25875739›Full record

ArticlePLoS genetics2015

The UPR branch IRE1-bZIP60 in plants plays an essential role in viral infection and is complementary to the only UPR pathway in yeast.

Lingrui Zhang, Hui Chen, Federica Brandizzi, Jeanmarie Verchot, Aiming Wang

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed, 1 pooled it
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed, 1 synthesis or guideline pooled it, 137 citations in OpenAlex.

  1. Pooled it
  2. Functional Characterization ofInternational journal of molecular sciences · 2026
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  15. In-Depth Characterization ofPlants (Basel, Switzerland) · 2024
    Article
  16. Article
  17. Article
  18. The Role of Plant Transcription Factors in the Fight against Plant Viruses.International journal of molecular sciences · 2023
    Review
  19. Review
  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Lingrui ZhangSouthern Crop Protection and Food Research, Agriculture and Agri-Food Canada, London, Ontario, Canada.
Hui ChenSouthern Crop Protection and Food Research, Agriculture and Agri-Food Canada, London, Ontario, Canada.
Federica BrandizziDepartment of Energy Plant Research Laboratory and Department of Plant Biology, Michigan State University, East Lansing, Michigan, USA.
Jeanmarie VerchotDepartment of Entomology and Plant Pathology, Oklahoma State University, Stillwater, Oklahoma, United States of America.
Aiming WangSouthern Crop Protection and Food Research, Agriculture and Agri-Food Canada, London, Ontario, Canada.
Agriculture and Agri-Food Canada · CAMichigan State University · USOklahoma State University · US

Funding

Unfolded protein response in the model species Arabidopsis thalianaR01GM101038 · NIGMS · MICHIGAN STATE UNIVERSITY · PI BRANDIZZI, FEDERICA · 2012 to 2019
$2.5M
NIGMS NIH HHS R01 GM101038PHS HHS 2014-67014-21715
6 · The paper itself

Abstract

The unfolded protein response (UPR) signaling network encompasses two pathways in plants, one mediated by inositol-requiring protein-1 (IRE1)-bZIP60 mRNA and the other by site-1/site-2 proteases (S1P/S2P)-bZIP17/bZIP28. As the major sensor of UPR in eukaryotes, IRE1, in response to endoplasmic reticulum (ER) stress, catalyzes the unconventional splicing of HAC1 in yeast, bZIP60 in plants and XBP1 in metazoans. Recent studies suggest that IRE1p and HAC1 mRNA, the only UPR pathway found in yeast, evolves as a cognate system responsible for the robust UPR induction. However, the functional connectivity of IRE1 and its splicing target in multicellular eukaryotes as well as the degree of conservation of IRE1 downstream signaling effectors across eukaryotes remains to be established. Here, we report that IRE1 and its substrate bZIP60 function as a strictly cognate enzyme-substrate pair to control viral pathogenesis in plants. Moreover, we show that the S1P/S2P-bZIP17/bZIP28 pathway, the other known branch of UPR in plants, does not play a detectable role in virus infection, demonstrating the distinct function of the IRE1-bZIP60 pathway in plants. Furthermore, we provide evidence that bZIP60 and HAC1, products of the enzyme-substrate duet, rather than IRE1, are functionally replaceable to cope with ER stress in yeast. Taken together, we conclude that the downstream signaling of the IRE1-mediated splicing is evolutionarily conserved in yeast and plants, and that the IRE1-bZIP60 UPR pathway not only confers overlapping functions with the other UPR branch in fundamental biology but also may exert a unique role in certain biological processes such as virus-plant interactions.

Indexed as

Host-Pathogen InteractionsUnfolded Protein ResponseAmino Acid SequenceArabidopsisArabidopsis ProteinsArsenate ReductasesBasic-Leucine Zipper Transcription FactorsMolecular Sequence DataProtein KinasesRNA SplicingSaccharomyces cerevisiaeSignal TransductionTymovirusArabidopsis ProteinsArsenate ReductasesBasic-Leucine Zipper Transcription FactorsHAC1 (HIGH ARSENIC CONTENT 1) protein, ArabidopsisIre1-1 protein, ArabidopsisProtein Kinases

Identifiers

PMID25875739
PMCPMC4398384
OpenAlexW2093484541

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.