Evidence map›Paper›PMID 25875295›Full record

ArticleToxins2015

Role of acidic residues in helices TH8-TH9 in membrane interactions of the diphtheria toxin T domain.

Chiranjib Ghatak, Mykola V Rodnin, Mauricio Vargas-Uribe, Andrew J McCluskey, Jose C Flores-Canales, Maria Kurnikova, Alexey S Ladokhin

Abstract read
In one paragraph

Article in Toxins, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
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  11. TheThe Journal of biological chemistry · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Chiranjib GhatakDepartment of Biochemistry and Molecular Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA. c.ghatak79@gmail.com.
Mykola V RodninDepartment of Biochemistry and Molecular Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA. mrodnin@kumc.edu.
Mauricio Vargas-UribeDepartment of Biochemistry and Molecular Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA. mvargas@kumc.edu.
Andrew J McCluskeyDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115, USA. andrew_mccluskey@hms.harvard.edu.
Jose C Flores-CanalesDepartment of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213, USA. jose.florescanales@gmail.com.
Maria KurnikovaDepartment of Chemistry, Carnegie Mellon University, Pittsburgh, PA 15213, USA. kurnikova@cmu.edu.
Alexey S LadokhinDepartment of Biochemistry and Molecular Biology, University of Kansas Medical Center, Kansas City, KS 66160, USA. aladokhin@kumc.edu.

Funding

Innovative Supercomputing for Breakthrough Molecular DynamicsRC2GM093307 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI DITTRICH, MARKUS · 2009 to 2010
$2.7M
pH-Triggered Membrane Insertion of ProteinsR01GM069783 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI COCCO, MELANIE J, KURNIKOVA, MARIA G · 2004 to 2014
$2.5M
NIGMS NIH HHS GM-069783NIGMS NIH HHS R01 GM069783NIGMS NIH HHS RC2 GM093307NIGMS NIH HHS RC2GM093307
6 · The paper itself

Abstract

The pH-triggered membrane insertion of the diphtheria toxin translocation domain (T domain) results in transferring the catalytic domain into the cytosol, which is relevant to potential biomedical applications as a cargo-delivery system. Protonation of residues is suggested to play a key role in the process, and residues E349, D352 and E362 are of particular interest because of their location within the membrane insertion unit TH8-TH9. We have used various spectroscopic, computational and functional assays to characterize the properties of the T domain carrying the double mutation E349Q/D352N or the single mutation E362Q. Vesicle leakage measurements indicate that both mutants interact with the membrane under less acidic conditions than the wild-type. Thermal unfolding and fluorescence measurements, complemented with molecular dynamics simulations, suggest that the mutant E362Q is more susceptible to acid destabilization because of disruption of native intramolecular contacts. Fluorescence experiments show that removal of the charge in E362Q, and not in E349Q/D352N, is important for insertion of TH8-TH9. Both mutants adopt a final functional state upon further acidification. We conclude that these acidic residues are involved in the pH-dependent action of the T domain, and their replacements can be used for fine tuning the pH range of membrane interactions.

Indexed as

AnimalsCell MembraneCHO CellsCircular DichroismCricetinaeCricetulusDiphtheria ToxinHydrogen-Ion ConcentrationMolecular Dynamics SimulationMutationProtein Structure, TertiarySpectrometry, FluorescenceDiphtheria Toxin

Identifiers

PMID25875295
PMCPMC4417968

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.