Evidence map›Paper›PMID 25875202›Full record

ArticlePloS one2015

Epigenetic modulations in activated cells early after HIV-1 infection and their possible functional consequences.

Juliana T Maricato, Maria N Furtado, Maisa C Takenaka, Edsel R M Nunes, Patricia Fincatti, Fabiana M Meliso, Ismael D C G da Silva, Miriam G Jasiulionis, Maria Cecília de Araripe Sucupira, Ricardo Sobhie Diaz and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Stress Induces Release of Extracellular Vesicles byJournal of immunology research · 2021
    Article
  7. Opioid-Mediated HIV-1 Immunopathogenesis.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2020
    Review
  8. Article
  9. Review
  10. Article
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  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Juliana T MaricatoDepartment of Microbiology, Immunology and Parasitology, Paulista Medical School, Federal University of São Paulo, São Paulo, Brazil.
Maria N FurtadoDepartment of Medicine, Federal University of São Paulo, São Paulo, Brazil.
Maisa C TakenakaDepartment of Microbiology, Immunology and Parasitology, Paulista Medical School, Federal University of São Paulo, São Paulo, Brazil.
Edsel R M NunesDepartment of Medicine, Federal University of São Paulo, São Paulo, Brazil.
Patricia FincattiDepartment of Medicine, Federal University of São Paulo, São Paulo, Brazil.
Fabiana M MelisoDepartment of Pharmacology, Federal University of São Paulo, São Paulo, Brazil.
Ismael D C G da SilvaDepartment of Medicine, Federal University of São Paulo, São Paulo, Brazil.
Miriam G JasiulionisDepartment of Pharmacology, Federal University of São Paulo, São Paulo, Brazil.
Maria Cecília de Araripe SucupiraDepartment of Medicine, Federal University of São Paulo, São Paulo, Brazil.
Ricardo Sobhie DiazDepartment of Medicine, Federal University of São Paulo, São Paulo, Brazil.
Luiz M R JaniniDepartment of Microbiology, Immunology and Parasitology, Paulista Medical School, Federal University of São Paulo, São Paulo, Brazil; Department of Medicine, Federal University of São Paulo, São Paulo, Brazil.
Universidade Federal de São Paulo · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epigenetic modifications refer to a number of biological processes which alter the structure of chromatin and its transcriptional activity such as DNA methylation and histone post-translational processing. Studies have tried to elucidate how the viral genome and its products are affected by epigenetic modifications imposed by cell machinery and how it affects the ability of the virus to either, replicate and produce a viable progeny or be driven to latency. The purpose of this study was to evaluate epigenetic modifications in PBMCs and CD4+ cells after HIV-1 infection analyzing three approaches: (i) global DNA- methylation; (ii) qPCR array and (iii) western blot. HIV-1 infection led to methylation increases in the cellular DNA regardless the activation status of PBMCs. The analysis of H3K9me3 and H3K27me3 suggested a trend towards transcriptional repression in activated cells after HIV-1 infection. Using a qPCR array, we detected genes related to epigenetic processes highly modulated in activated HIV-1 infected cells. SETDB2 and RSK2 transcripts showed highest up-regulation levels. SETDB2 signaling is related to transcriptional silencing while RSK2 is related to either silencing or activation of gene expression depending on the signaling pathway triggered down-stream. In addition, activated cells infected by HIV-1 showed lower CD69 expression and a decrease of IL-2, IFN-γ and metabolism-related factors transcripts indicating a possible functional consequence towards global transcriptional repression found in HIV-1 infected cells. Conversely, based on epigenetic markers studied here, non-stimulated cells infected by HIV-1, showed signs of global transcriptional activation. Our results suggest that HIV-1 infection exerts epigenetic modulations in activated cells that may lead these cells to transcriptional repression with important functional consequences. Moreover, non-stimulated cells seem to increase gene transcription after HIV-1 infection. Based on these observations, it is possible to speculate that the outcome of viral infections may be influenced by the cellular activation status at the moment of infection.

Indexed as

Epigenesis, GeneticCD4-Positive T-LymphocytesClone CellsHistonesHIV-1HIV InfectionsHumansLeukocytes, MononuclearLymphocyte ActivationProtein Processing, Post-TranslationalHistones

Identifiers

PMID25875202
PMCPMC4395311
OpenAlexW2032749638

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.