Evidence map›Paper›PMID 25875180›Full record

ArticlePloS one2015

Sphingobium fuliginis HC3: a novel and robust isolated biphenyl- and polychlorinated biphenyls-degrading bacterium without dead-end intermediates accumulation.

Jinxing Hu, Mingrong Qian, Qian Zhang, Jinglan Cui, Chunna Yu, Xiaomei Su, Chaofeng Shen, Muhammad Z Hashmi, Jiyan Shi

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Recent advances in the biodegradation of polychlorinated biphenyls.World journal of microbiology & biotechnology · 2020
    Review
  8. Article
  9. Article
  10. Adaptive Evolution ofFrontiers in microbiology · 2019
    Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Jinxing HuDepartment of Environmental Engineering, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China.
Mingrong QianInstitute of Quality and Standard on Agricultural Products, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.
Qian ZhangDepartment of Environmental Engineering, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China.
Jinglan CuiDepartment of Environmental Engineering, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China.
Chunna YuCollege of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, China.
Xiaomei SuDepartment of Environmental Engineering, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China.
Chaofeng ShenDepartment of Environmental Engineering, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China.
Muhammad Z HashmiDepartment of Environmental Engineering, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China.
Jiyan ShiDepartment of Environmental Engineering, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, China.
Zhejiang University of Technology · CNHangzhou Normal University · CNZheJiang Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biphenyl and polychlorinated biphenyls (PCBs) are typical environmental pollutants. However, these pollutants are hard to be totally mineralized by environmental microorganisms. One reason for this is the accumulation of dead-end intermediates during biphenyl and PCBs biodegradation, especially benzoate and chlorobenzoates (CBAs). Until now, only a few microorganisms have been reported to have the ability to completely mineralize biphenyl and PCBs. In this research, a novel bacterium HC3, which could degrade biphenyl and PCBs without dead-end intermediates accumulation, was isolated from PCBs-contaminated soil and identified as Sphingobium fuliginis. Benzoate and 3-chlorobenzoate (3-CBA) transformed from biphenyl and 3-chlorobiphenyl (3-CB) could be rapidly degraded by HC3. This strain has strong degradation ability of biphenyl, lower chlorinated (mono-, di- and tri-) PCBs as well as mono-CBAs, and the biphenyl/PCBs catabolic genes of HC3 are cloned on its plasmid. It could degrade 80.7% of 100 mg L -1 biphenyl within 24 h and its biphenyl degradation ability could be enhanced by adding readily available carbon sources such as tryptone and yeast extract. As far as we know, HC3 is the first reported that can degrade biphenyl and 3-CB without accumulation of benzoate and 3-CBA in the genus Sphingobium, which indicates the bacterium has the potential to totally mineralize biphenyl/PCBs and might be a good candidate for restoring biphenyl/PCBs-polluted environments.

Indexed as

Gene Expression Regulation, BacterialGenes, BacterialSoil MicrobiologyBiodegradation, EnvironmentalChlorobenzoatesEnvironmental PollutantsPeptonesPhylogenyPlasmidsPolychlorinated BiphenylsRNA, Ribosomal, 16SSequence Analysis, DNASphingomonadaceaeChlorobenzoatesEnvironmental PollutantsPeptonesPolychlorinated BiphenylsRNA, Ribosomal, 16Stryptones

Identifiers

PMID25875180
PMCPMC4395236
OpenAlexW2007851959

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.