ArticleFunctional & integrative genomics2015
Wild soybean roots depend on specific transcription factors and oxidation reduction related genesin response to alkaline stress.
Article in Functional & integrative genomics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.
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Who cites it
28 citing papers in PubMed, 1 synthesis or guideline pooled it, 55 citations in OpenAlex.
- Harnessing meta-analysis and artificial intelligence to reveal conserved regulatory biosignatures of abiotic stress in soybean.Biology direct · 2026Pooled it
- GsIRT3: a zinc-iron transporter gene from Glycine soja, enhancing alkali stress tolerance in Arabidopsis thaliana.Journal of plant research · 2026Article
- Physiological and molecular processes of plant tolerance to bicarbonate-induced alkaline stress.Stress biology · 2026Review
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- Genome-Wide Analysis ofPlants (Basel, Switzerland) · 2026Article
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- Quantitative Phosphoproteomic Analysis Provides Insights into the Sodium Bicarbonate Responsiveness ofBiomolecules · 2023Article
- GsPKS24, a calcineurin B-like protein-interacting protein kinase gene from Glycine soja, positively regulates tolerance to pH stress and ABA signal transduction.Functional & integrative genomics · 2023Article
- Cloning and in silico characterization of an abiotic stress-inducible U-box domain-containing protein gene GsPUB8 from Glycine soja.Scientific reports · 2022Article
- Article
- Genome-Wide Identification, Characterization and Expression Analysis of SoybeanInternational journal of molecular sciences · 2021Article
- Transcriptome sequencing of wild soybean revealed gene expression dynamics under low nitrogen stress.Journal of applied genetics · 2021Article
- Transcription Factor ChbZIP1 from Alkaliphilic MicroalgaeInternational journal of molecular sciences · 2021Article
- Genome-wide identification and characterization of the soybean SOD family during alkaline stress.PeerJ · 2020Article
- Flax (Linum usitatissimum L.) response to non-optimal soil acidity and zinc deficiency.BMC plant biology · 2019Article
- Article
- A Glycine soja group S2 bZIP transcription factor GsbZIP67 conferred bicarbonate alkaline tolerance in Medicago sativa.BMC plant biology · 2018Article
- Genome-wide analysis and expression profiling of PP2C clade D under saline and alkali stresses in wild soybean and Arabidopsis.Protoplasma · 2018Article
- Genome-Wide Analysis ofFrontiers in plant science · 2018Article
- GsCHX19.3, a member of cation/HScientific reports · 2017Article
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Authors and funding
13 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Soil alkalinity is an important environmental problem limiting agricultural productivity. Wild soybean (Glycine soja) shows strong alkaline stress tolerance, so it is an ideal plant candidate for studying the molecular mechanisms of alkaline tolerance and identifying alkaline stress-responsive genes. However, limited information is available about G. soja responses to alkaline stress on a genomic scale. Therefore, in the present study, we used RNA sequencing to compare transcript profiles of G. soja root responses to sodium bicarbonate (NaHCO3) at six time points, and a total of 68,138,478 pairs of clean reads were obtained using the Illumina GAIIX. Expression patterns of 46,404 G. soja genes were profiled in all six samples based on RNA-seq data using Cufflinks software. Then, t12 transcription factors from MYB, WRKY, NAC, bZIP, C2H2, HB, and TIFY families and 12 oxidation reduction related genes were chosen and verified to be induced in response to alkaline stress by using quantitative real-time polymerase chain reaction (qRT-PCR). The GO functional annotation analysis showed that besides "transcriptional regulation" and "oxidation reduction," these genes were involved in a variety of processes, such as "binding" and "response to stress." This is the first comprehensive transcriptome profiling analysis of wild soybean root under alkaline stress by RNA sequencing. Our results highlight changes in the gene expression patterns and identify a set of genes induced by NaHCO3 stress. These findings provide a base for the global analyses of G. soja alkaline stress tolerance mechanisms.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.