ArticlePloS one2015
Analyses of the complete genome and gene expression of chloroplast of sweet potato [Ipomoea batata].
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.
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Who cites it
27 citing papers in PubMed, 1 synthesis or guideline pooled it.
- First systematic review of the last 30 years of research on sweetpotato: elucidating the frontiers and hotspots.Frontiers in plant science · 2024Pooled it
- Chloroplast genome analysis of Dendrocalamus × mutatus and its implications for bamboo classification.BMC plant biology · 2025Article
- Genetic diversity evaluation and selection methods of sweet potato hybrid FBMC plant biology · 2025Article
- The chloroplast genome sequences of Ipomoea alba and I. obscura (Convolvulaceae): genome comparison and phylogenetic analysis.Scientific reports · 2024Article
- A comprehensive overview of omics-based approaches to enhance biotic and abiotic stress tolerance in sweet potato.Horticulture research · 2024Article
- Comparative analysis of chloroplast and mitochondrial genomes of sweet potato provides evidence of gene transfer.Scientific reports · 2024Article
- Complete chloroplast genome of Lens lamottei reveals intraspecies variation among with Lens culinaris.Scientific reports · 2023Article
- Comparative chloroplast genomics and insights into the molecular evolution of Tanaecium (Bignonieae, Bignoniaceae).Scientific reports · 2023Article
- A Comprehensive Evolutionary Study of Chloroplast RNA Editing in Gymnosperms: A Novel Type of G-to-A RNA Editing Is Common in Gymnosperms.International journal of molecular sciences · 2022Article
- The chloroplast genome of black pepper (Frontiers in plant science · 2022Article
- New plastomes of eight Ipomoea species and four putative hybrids from Eastern Amazon.PloS one · 2022Article
- Complete chloroplast genome of a novel chlorophyll-deficient mutant (Mitochondrial DNA. Part B, Resources · 2021Article
- Green giant-a tiny chloroplast genome with mighty power to produce high-value proteins: history and phylogeny.Plant biotechnology journal · 2021Review
- Comparative Chloroplast Genomics of Fritillaria (Liliaceae), Inferences for Phylogenetic Relationships between Fritillaria and Lilium and Plastome Evolution.Plants (Basel, Switzerland) · 2020Article
- Current status in whole genome sequencing and analysis of Ipomoea spp.Plant cell reports · 2019Review
- Plant organelle RNA editing and its specificity factors: enhancements of analyses and new database features in PREPACT 3.0.BMC bioinformatics · 2018Article
- Insights into population structure of East African sweetpotato cultivars from hybrid assembly of chloroplast genomes.Gates open research · 2018Article
- Article
- Characterization and Comparative Analysis of the Complete Chloroplast Genome of the Critically Endangered SpeciesBioMed research international · 2018Article
- The Complete Chloroplast Genomes of SixFrontiers in plant science · 2018Article
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Sweet potato [Ipomoea batatas (L.) Lam] ranks among the top seven most important food crops cultivated worldwide and is hexaploid plant (2n=6x=90) in the Convolvulaceae family with a genome size between 2,200 to 3,000 Mb. The genomic resources for this crop are deficient due to its complicated genetic structure. Here, we report the complete nucleotide sequence of the chloroplast (cp) genome of sweet potato, which is a circular molecule of 161,303 bp in the typical quadripartite structure with large (LSC) and small (SSC) single-copy regions separated by a pair of inverted repeats (IRs). The chloroplast DNA contains a total of 145 genes, including 94 protein-encoding genes of which there are 72 single-copy and 11 double-copy genes. The organization and structure of the chloroplast genome (gene content and order, IR expansion/contraction, random repeating sequences, structural rearrangement) of sweet potato were compared with those of Ipomoea (L.) species and some basal important angiosperms, respectively. Some boundary gene-flow and gene gain-and-loss events were identified at intra- and inter-species levels. In addition, by comparing with the transcriptome sequences of sweet potato, the RNA editing events and differential expressions of the chloroplast functional-genes were detected. Moreover, phylogenetic analysis was conducted based on 77 protein-coding genes from 33 taxa and the result may contribute to a better understanding of the evolution progress of the genus Ipomoea (L.), including phylogenetic relationships, intraspecific differentiation and interspecific introgression.
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