Evidence map›Paper›PMID 25873936›Full record

ArticleFrontiers in genetics2015

A re-formulation of generalized linear mixed models to fit family data in genetic association studies.

Tao Wang, Peng He, Kwang Woo Ahn, Xujing Wang, Soumitra Ghosh, Purushottam Laud

Abstract read
In one paragraph

Article in Frontiers in genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Transforming Growth Factor-β1 Decreases βAmerican journal of respiratory cell and molecular biology · 2019
    Article
  2. An Efficient Test for Gene-Environment Interaction in Generalized Linear Mixed Models with Family Data.International journal of environmental research and public health · 2017
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Tao WangDivision of Biostatistics, Medical College of Wisconsin Milwaukee, WI, USA.
Peng HeDivision of Biostatistics, Medical College of Wisconsin Milwaukee, WI, USA ; Global Biostatistical Science, Amgen Inc. Thousand Oaks, CA, USA.
Kwang Woo AhnDivision of Biostatistics, Medical College of Wisconsin Milwaukee, WI, USA.
Xujing WangBioinformatics and Systems Biology Core, National Heart, Lung, and Blood Institute Bethesda, MD, USA.
Soumitra GhoshDepartment of Genetics, Quantitative Sciences, GlaxoSmithKline King of Prussia, PA, USA.
Purushottam LaudDivision of Biostatistics, Medical College of Wisconsin Milwaukee, WI, USA.

Funding

Data Resource for Analyzing Blood &Marrow TransplantsU24CA076518 · NCI · MEDICAL COLLEGE OF WISCONSIN · PI Amy M Moskop, Bronwen Shaw · 1998 to 2026
$105.2M
Type 1 Diabetes Genetics ConsortiumU01DK062418 · NIDDK · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI RICH, STEPHEN S. · 2002 to 2007
$59.8M
Systems Biology CoreZIAHL006192 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI WANG, XUJING · 2014 to 2016
$4.6M
Integrative genomics to to dissect the genetic regulation of T1D onsetR01DK080100 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI WANG, XUJING · 2007 to 2010
$1.0M
NCI NIH HHS U24 CA076518NIDDK NIH HHS R01 DK080100NIDDK NIH HHS U01 DK062418
6 · The paper itself

Abstract

The generalized linear mixed model (GLMM) is a useful tool for modeling genetic correlation among family data in genetic association studies. However, when dealing with families of varied sizes and diverse genetic relatedness, the GLMM has a special correlation structure which often makes it difficult to be specified using standard statistical software. In this study, we propose a Cholesky decomposition based re-formulation of the GLMM so that the re-formulated GLMM can be specified conveniently via "proc nlmixed" and "proc glimmix" in SAS, or OpenBUGS via R package BRugs. Performances of these procedures in fitting the re-formulated GLMM are examined through simulation studies. We also apply this re-formulated GLMM to analyze a real data set from Type 1 Diabetes Genetics Consortium (T1DGC).

Indexed as

Bayesian methodsCholesky decompositionfamily datageneralized linear mixed models (GLMM)genetic correlationgenetic variance componentsrandom genetic effectsre-parameterization

Identifiers

PMID25873936
PMCPMC4379931

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.