Evidence map›Paper›PMID 25873470›Full record

ArticleNature communications2015

Increased prevalence of EPAS1 variant in cattle with high-altitude pulmonary hypertension.

John H Newman, Timothy N Holt, Joy D Cogan, Bethany Womack, John A Phillips, Chun Li, Zachary Kendall, Kurt R Stenmark, Milton G Thomas, R Dale Brown and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
7.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 82 citations in OpenAlex.

  1. Variants ofLife science alliance · 2026
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  14. Association ofF1000Research · 2022
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  16. Frontiers in veterinary science · 2022
    Article
  17. Article
  18. Article
  19. Pulmonary Hypertension in Acute and Chronic High Altitude Maladaptation Disorders.International journal of environmental research and public health · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

John H NewmanDepartment of Medicine, Division of Allergy, Pulmonary and Critical Care, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
Timothy N HoltDepartment of Veterinary Sciences, College of Agricultural Science, Colorado State University, Ft Collins, Colorado 80523, USA.
Joy D CoganDepartment of Pediatrics, Division of Medical Genetics and Genomic Medicine, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
Bethany WomackDepartment of Pediatrics, Division of Medical Genetics and Genomic Medicine, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
John A PhillipsDepartment of Pediatrics, Division of Medical Genetics and Genomic Medicine, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
Chun LiDepartment of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, Ohio 44106, USA.
Zachary KendallDepartment of Pediatrics, Division of Medical Genetics and Genomic Medicine, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
Kurt R StenmarkCardiovascular Pulmonary Research Laboratory, Department of Medicine and Pediatrics, University of Colorado, Denver Colorado 80045, USA.
Milton G ThomasDepartment of Animal Science, Colorado State University, Ft Collins, Colorado 80523, USA.
R Dale BrownCardiovascular Pulmonary Research Laboratory, Department of Medicine and Pediatrics, University of Colorado, Denver Colorado 80045, USA.
Suzette R RiddleCardiovascular Pulmonary Research Laboratory, Department of Medicine and Pediatrics, University of Colorado, Denver Colorado 80045, USA.
James D WestDepartment of Medicine, Division of Allergy, Pulmonary and Critical Care, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
Rizwan HamidDepartment of Pediatrics, Division of Medical Genetics and Genomic Medicine, Vanderbilt University School of Medicine, Nashville, Tennessee 37232, USA.
Vanderbilt University · USUniversity of Colorado Denver · USColorado State University · USCase Western Reserve University · US

Funding

VRAC and Rho in pulmonary EC proliferationP01HL014985 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI STENMARK, KURT R. · 1985 to 2019
$35.1M
Sex Hormones in Pulmonary Arterial HypertensionP01HL108800 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI NEWMAN, JOHN HUGHES · 2012 to 2021
$22.0M
Vanderbilt Center for Undiagnosed Diseases (VCUD) - BiorepositoryU01HG007674 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI COGAN, JOY D, HAMID, RIZWAN · 2014 to 2022
$13.7M
Fibroblasts and Mononuclear Fibrogenic Cells Drive Right Ventricular Pulmonary ArR01HL114887 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI BULL, TODD M, BUTTRICK, PETER N. · 2012 to 2016
$3.4M
Role of BMPR2 expression in HPAH; implications for novel therapeutic approachesR01HL102020 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HAMID, RIZWAN · 2011 to 2015
$2.3M
Crosstalk Between Metabolism and Inflammation in Pulmonary HypertensionR01HL125827 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI STENMARK, KURT R., ZHANG, QINGHONG · 2015 to 2015
$492k
NHGRI NIH HHS U01 HG007674NHLBI NIH HHS HL014985NHLBI NIH HHS HL 114887NHLBI NIH HHS P01 HL014985NHLBI NIH HHS P01 HL108800-01NHLBI NIH HHS R01 HL102020NHLBI NIH HHS R01HL102020-01NHLBI NIH HHS R01 HL114887NHLBI NIH HHS R01 HL125827PHS HHS U01G007674-01
6 · The paper itself

Abstract

High-altitude pulmonary hypertension (HAPH) has heritable features and is a major cause of death in cattle in the Rocky Mountains, USA. Although multiple genes are likely involved in the genesis of HAPH, to date no major gene variant has been identified. Using whole-exome sequencing, we report the high association of an EPAS1 (HIF2α) double variant in the oxygen degradation domain of EPAS1 in Angus cattle with HAPH, mean pulmonary artery pressure >50 mm Hg in two independent herds. Expression analysis shows upregulation of 26 of 27 HIF2α target genes in EPAS1 carriers with HAPH. Of interest, this variant appears to be prevalent in lowland cattle, in which 41% of a herd of 32 are carriers, but the variant may only have a phenotype when the animal is hypoxemic at altitude. The EPAS1 variant will be a tool to determine the cells and signalling pathways leading to HAPH.

Indexed as

AllelesAltitude SicknessAnimalsBasic Helix-Loop-Helix ProteinsCattleCattle DiseasesEndothelial PAS Domain-Containing Protein 1FemaleGenetic Predisposition to DiseaseGenetic VariationHypertension, PulmonaryMaleUp-RegulationBasic Helix-Loop-Helix ProteinsEndothelial PAS Domain-Containing Protein 1

Identifiers

PMID25873470
PMCPMC4399003
OpenAlexW2063081054

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.