Evidence map›Paper›PMID 25872961›Full record

ArticleInternational journal of molecular medicine2015

Application of multiplex ligation-dependent probe amplification, and identification of a heterozygous Alu-associated deletion and a uniparental disomy of chromosome 1 in two patients with 3-hydroxy-3-methylglutaryl-CoA lyase deficiency.

Yuka Aoyama, Toshiyuki Yamamoto, Naomi Sakaguchi, Mika Ishige, Toju Tanaka, Tomoko Ichihara, Katsuaki Ohara, Hiroko Kouzan, Yasutomi Kinosada, Toshiyuki Fukao

Open access · hybridAbstract readCase Reports
In one paragraph

Article in International journal of molecular medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Identification of a rare homozygousIntractable & rare diseases research · 2018
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Yuka AoyamaMedical Information Sciences Division, United Graduate School of Drug Discovery and Medical information Sciences, Gifu University, Gifu 501-1194, Japan.
Toshiyuki YamamotoTokyo Women's Medical University Institute for Integrated Medical Sciences (TIIMS), Tokyo 162‑8666, Japan.
Naomi SakaguchiDepartment of Pediatrics, Graduate School of Medicine, Gifu University, Gifu 501‑1194, Japan.
Mika IshigeDepartment of Pediatrics, Nihon University School of Medicine, Sapporo, Hokkaido 063‑0005, Japan.
Toju TanakaDepartment of Pediatrics and Clinical Research, NHO Hokkaido Medical Center, Sapporo, Hokkaido 063‑0005, Japan.
Tomoko IchiharaDepartment of Pediatrics, Takamatsu Red Cross Hospital, Takamatsu, Kagawa 760-0017, Japan.
Katsuaki OharaDepartment of Pediatrics, Takamatsu Red Cross Hospital, Takamatsu, Kagawa 760-0017, Japan.
Hiroko KouzanDepartment of Pediatrics, Takamatsu Red Cross Hospital, Takamatsu, Kagawa 760-0017, Japan.
Yasutomi KinosadaMedical Information Sciences Division, United Graduate School of Drug Discovery and Medical information Sciences, Gifu University, Gifu 501-1194, Japan.
Toshiyuki FukaoDepartment of Pediatrics, Graduate School of Medicine, Gifu University, Gifu 501‑1194, Japan.
Takamatsu Red Cross Hospital · JPGifu University · JPGifu University of Medical Science · JPNational Hospital Organization Hokkaido Medical Center · JPNihon University · JPTokyo Women's Medical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mitochondrial 3-hydroxy-3-methylglutaryl-CoA lyase (HMGCL) deficiency is an autosomal recessive disorder affecting the leucine catabolic pathway and ketone body synthesis, and is clinically characterized by metabolic crises with hypoketotic hypoglycemia, metabolic acidosis and hyperammonemia. In the present study, we initially used PCR with genomic followed by direct sequencing to investigate the molecular genetic basis of HMGCL deficiency in two patients clinically diagnosed with the condition. Although we identified a mutation in each patient, the inheritance patterns of these mutations were not consistent with disease causation. Therefore, we investigated HMGCL using multiplex ligation-dependent probe amplification (MLPA) to determine the copy numbers of all exons. A heterozygous deletion that included exons 2-4 was identified in one of the patients. MLPA revealed that the other patient had two copies for all HMGCL exons. Paternal uniparental isodisomy of chromosome 1 was confirmed in this patient by microarray analysis. These findings indicate that MLPA is useful for the identification of genomic aberrations and mutations other than small-scale nucleotide alterations. To the best of our knowledge, this is the first study describing HMGCL deficiency caused by uniparental disomy.

Indexed as

Alu ElementsBase SequenceMultiplex Polymerase Chain ReactionSequence DeletionChromosomes, Human, Pair 1ExonsFemaleHumansInfantMaleMetabolism, Inborn ErrorsOxo-Acid-LyasesUniparental Disomy3-hydroxy-3-methylglutaryl-coenzyme A lyaseOxo-Acid-Lyases

Identifiers

PMID25872961
PMCPMC4432928
OpenAlexW2057948424

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.