Evidence map›Paper›PMID 25870594›Full record

ArticleFrontiers in microbiology2015

Structure, mineralogy, and microbial diversity of geothermal spring microbialites associated with a deep oil drilling in Romania.

Cristian Coman, Cecilia M Chiriac, Michael S Robeson, Corina Ionescu, Nicolae Dragos, Lucian Barbu-Tudoran, Adrian-Ştefan Andrei, Horia L Banciu, Cosmin Sicora, Mircea Podar

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Cristian ComanTaxonomy and Ecology, Algology, National Institute of Research and Development for Biological Sciences, Institute of Biological Research Cluj-Napoca, Romania ; Molecular Biology and Biotechnology Department, Faculty of Biology and Geology, Babeş-Bolyai University Cluj-Napoca, Romania.
Cecilia M ChiriacTaxonomy and Ecology, Algology, National Institute of Research and Development for Biological Sciences, Institute of Biological Research Cluj-Napoca, Romania ; Molecular Biology and Biotechnology Department, Faculty of Biology and Geology, Babeş-Bolyai University Cluj-Napoca, Romania.
Michael S RobesonBiosciences Division, Oak Ridge National Laboratory Oak Ridge, TN, USA ; Fish, Wildlife, and Conservation Biology, Colorado State University Fort Collins, CO, USA.
Corina IonescuGeology Department, Faculty of Biology and Geology, Babeş-Bolyai University Cluj-Napoca, Romania ; Kazan (Volga Region) Federal University Tatarstan, Russia.
Nicolae DragosTaxonomy and Ecology, Algology, National Institute of Research and Development for Biological Sciences, Institute of Biological Research Cluj-Napoca, Romania ; Molecular Biology and Biotechnology Department, Faculty of Biology and Geology, Babeş-Bolyai University Cluj-Napoca, Romania.
Lucian Barbu-TudoranElectron Microscopy Center, Faculty of Biology and Geology, Babeş-Bolyai University Cluj-Napoca, Romania.
Adrian-Ştefan AndreiMolecular Biology and Biotechnology Department, Faculty of Biology and Geology, Babeş-Bolyai University Cluj-Napoca, Romania ; Molecular Biology Center, Institute for Interdisciplinary Research on Bio-Nano-Sciences, Babeş-Bolyai University Cluj-Napoca, Romania.
Horia L BanciuMolecular Biology and Biotechnology Department, Faculty of Biology and Geology, Babeş-Bolyai University Cluj-Napoca, Romania ; Molecular Biology Center, Institute for Interdisciplinary Research on Bio-Nano-Sciences, Babeş-Bolyai University Cluj-Napoca, Romania.
Cosmin SicoraBiological Research Center Jibou, Romania.
Mircea PodarBiosciences Division, Oak Ridge National Laboratory Oak Ridge, TN, USA.
Babeș-Bolyai University · RONational Institute of Research and Development for Biological Sciences · ROOak Ridge National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Modern mineral deposits play an important role in evolutionary studies by providing clues to the formation of ancient lithified microbial communities. Here we report the presence of microbialite-forming microbial mats in different microenvironments at 32°C, 49°C, and 65°C around the geothermal spring from an abandoned oil drill in Ciocaia, Romania. The mineralogy and the macro- and microstructure of the microbialites were investigated, together with their microbial diversity based on a 16S rRNA gene amplicon sequencing approach. The calcium carbonate is deposited mainly in the form of calcite. At 32°C and 49°C, the microbialites show a laminated structure with visible microbial mat-carbonate crystal interactions. At 65°C, the mineral deposit is clotted, without obvious organic residues. Partial 16S rRNA gene amplicon sequencing showed that the relative abundance of the phylum Archaea was low at 32°C (<0.5%) but increased significantly at 65°C (36%). The bacterial diversity was either similar to other microbialites described in literature (the 32°C sample) or displayed a specific combination of phyla and classes (the 49°C and 65°C samples). Bacterial taxa were distributed among 39 phyla, out of which 14 had inferred abundances >1%. The dominant bacterial groups at 32°C were Cyanobacteria, Gammaproteobacteria, Firmicutes, Bacteroidetes, Chloroflexi, Thermi, Actinobacteria, Planctomycetes, and Defferibacteres. At 49°C, there was a striking dominance of the Gammaproteobacteria, followed by Firmicutes, Bacteroidetes, and Armantimonadetes. The 65°C sample was dominated by Betaproteobacteria, Firmicutes, [OP1], Defferibacteres, Thermi, Thermotogae, [EM3], and Nitrospirae. Several groups from Proteobacteria and Firmicutes, together with Halobacteria and Melainabacteria were described for the first time in calcium carbonate deposits. Overall, the spring from Ciocaia emerges as a valuable site to probe microbes-minerals interrelationships along thermal and geochemical gradients.

Indexed as

amplicon sequencingbiomineralizationcarbonatehot springsmicrobial diversityoil drill

Identifiers

PMID25870594
PMCPMC4378309
OpenAlexW2053346491

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.